Halomonas sp. MCCC 1A13316: HNO52_02650
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Entry
HNO52_02650 CDS
T10913
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hamc Halomonas sp. MCCC 1A13316
Pathway
hamc03030
DNA replication
hamc03430
Mismatch repair
hamc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hamc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HNO52_02650 (dnaE)
03430 Mismatch repair
HNO52_02650 (dnaE)
03440 Homologous recombination
HNO52_02650 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hamc03032
]
HNO52_02650 (dnaE)
03400 DNA repair and recombination proteins [BR:
hamc03400
]
HNO52_02650 (dnaE)
Enzymes [BR:
hamc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HNO52_02650 (dnaE)
DNA replication proteins [BR:
hamc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HNO52_02650 (dnaE)
DNA repair and recombination proteins [BR:
hamc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HNO52_02650 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HROB
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
QOR37538
LinkDB
All DBs
Position
565293..568796
Genome browser
AA seq
1167 aa
AA seq
DB search
MTTPFVHLRVHTEYSLVDGLVRLKPLLKATGEQGMPALAVTDESNLFGLVKFYRGAQGAG
LKPVIGADLWLANSYDETHPYRLTLLAMNDVGYRNLTELISRGWMQGQRQGRAVLEKSWV
LAQSEGLIALSGGREGEIGRHLLADHRDEARLLLEEWQSAFPDRFYLELTRTGRPQEEEC
VHLSVELAIDSGTPVVATNDVRFLERDDYWAHETRVSIGEGKALDDPRRERKYTEEQYLK
SPSEMAELFADIPEALENSVMIAARCNVDVRLGEIFLPEFEIPEGLTQDEFFRKVSHDGL
TERLDFLYPAGKYPRDGAEFAEIDKRYRERLDFELDIIIQMGFPGYFLIVMDFIQWAKDN
DVPVGPGRGSGAGSLVAYAQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMEKRDRV
IEYVADRYGRNAVSQIVTFGTMAAKAVVRDVARAQGRPYSLGDKLSKLIPFEVGMTLAKA
IEAEPALKEFVENDEEAAEIWEMAVKLEGITRGTGKHAGGVVIAPTKLTDFSPLLCDEEG
NGLVVQFDKNDIEEAGLVKFDFLGLRTLTIIDWALEMVDKVRAVKGEGPLNIDSIPLDDG
ATFEMLKRAETTAVFQLESRGMKELIKRLLPDSLEDMIALVALFRPGPLQSGMVDDFINR
KHGRAEISYPHPDYQHEWLKPVLEPTYGIILYQEQVMQIAQVLAGYSLGQADMLRRAMGK
KKPEEMAKQRAGFMEGCAANGIDKELAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL
KSHYPGPFMAAVMSTEMDNLDKVVPLIEESRRIGLTVTPPDVNIGAYKFSVDTEGRVVYG
LGAIRGVGEGPIGAIVEAREADGPFADLFDFCRRVDPKRMNKRTLEALIRSGALDNLGPN
RAVLAAALDDALRAAAQTQTNQNLGMMDMFGEAFADAAVESDPYEAYRRAREWTDKERLA
GEKETLGLYLTGHPIDEYEKELARFVSTRISDLKPSREPQRVAGLVVAMRTMKSKRGDTM
AFITLDDRTGRIEASLFGELFDSLRGQIEADQVLIVEGEVSSDDFSGGLRLRGKDVTPMV
AARARYGEAVELSLDGTRVNGRLIDTLRDSLAPHRDDGGLPVRLRYRNDAAAGWLELDGQ
WRVSPCDELLIALREVEGQDGVRLKYR
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgcctttcgtacacctgcgcgtccataccgagtactccctggtcgatggcctg
gtgcgactcaagccgctgctcaaggccaccggcgagcagggcatgccggcactggccgtg
accgacgagtccaacctattcggcctggtcaagttctatcgtggcgcccagggcgccggg
ctgaagccggtgattggtgccgacctgtggctggccaactcctacgacgagacgcaccct
taccggctgacgctgctggcgatgaacgacgtcggttatcgcaacctcaccgagctgatc
tcgcgaggctggatgcaggggcagcgccagggacgcgccgtgctcgagaagtcatgggtg
ctcgcgcagagcgaaggactgatcgcgctctccggtggccgcgagggcgagatcggtcgc
catctgctggccgatcatcgtgacgaggcgcgcctgctgctcgaggagtggcagtcggct
ttccctgatcgcttctacctggagctgacccgcaccgggcggccgcaggaggaggagtgc
gtgcacctctcggtggagctcgccatcgacagcggcaccccggtggtggcgaccaacgat
gtacgcttcctcgagcgcgacgactactgggcccatgagacgcgtgtctccatcggcgag
ggcaaggcgctggacgacccgcgccgtgaacgaaaatataccgaagagcagtatctcaag
agcccctcggagatggccgagctattcgccgacattcccgaagcgctcgagaacagcgtg
atgatcgccgcacgctgtaacgtcgacgtgcgcctgggcgagatcttcctgccggagttc
gagattcccgaagggctgacccaggacgagttctttcgcaaggtctcccacgacggcctc
accgagcgcctcgatttcctctacccggccgggaagtacccgcgtgacggcgccgagttc
gccgagatcgacaagcgctaccgcgagcggctggacttcgagctcgacatcatcatccag
atgggcttccccggctacttcctgatcgtgatggacttcatccagtgggccaaggacaac
gacgtcccggtggggccggggcgcggctccggcgccggctcgctggtggcttacgcacag
aagatcaccgatctcgacccactggaatacgacctgctgttcgagcgcttcctcaacccc
gagcgtgtctcgatgcccgacttcgacgtcgacttctgcatggagaagcgcgaccgggta
atcgagtacgtcgccgaccgctacggccgcaacgcggtatcccagatcgtcaccttcggc
accatggcggccaaggcggtggtgcgcgacgtggctcgtgcccagggccggccttactcc
ctgggcgacaagctctccaagctgatccccttcgaggtgggcatgacgctggccaaggcc
atcgaggcggagccggcgctcaaggagttcgtcgagaacgacgaggaggccgccgagatc
tgggagatggcggtcaagctcgagggcatcacccgcggcaccggcaagcacgccggcggc
gtggtgatcgcgccgaccaagctcaccgacttctcgccgctgctgtgcgacgaggagggc
aacggcctggtcgtgcagttcgacaagaacgacatcgaggaggccgggctggtcaagttc
gacttcctcgggctgcgcaccctgaccatcatcgactgggcgctggagatggtcgacaag
gtgcgtgccgtcaagggcgaggggccgctcaacatcgacagcatcccgctcgacgacggc
gccaccttcgagatgctcaagcgcgccgagaccacggcagtgttccagctcgaatcacgc
ggcatgaaggagctgatcaagcgcctgctgcccgactcgctggaggacatgatcgccctc
gtggcactgttccgcccgggcccgctgcagtcgggcatggtcgacgacttcatcaaccgc
aagcacggtcgcgccgaaatctcctacccgcacccggactaccagcacgaatggctcaag
ccggtgctcgagcccacctacggcatcatcctctaccaggagcaggtgatgcagattgcc
caggtgctggcgggctatagcctgggtcaagccgacatgctgcgccgcgccatgggcaag
aagaagcccgaggagatggccaagcagcgcgccggcttcatggagggctgcgcggccaac
ggcatcgacaaggagctggccggcaacatcttcgacctggtggagaaattcgccggttac
ggtttcaacaagtcgcactcggcggcctacggcctggtctcctaccagaccgcctggctc
aagtcgcactacccggggccgttcatggctgcggtgatgtccaccgagatggacaacctc
gacaaggtggtaccgctgatcgaggagtcgcggcgcatcggcctgaccgtgaccccgccg
gacgtcaacatcggcgcctacaagttcagcgtggataccgaagggcgcgtggtctacggc
ctgggggccatccgcggcgtgggcgaggggccgatcggcgccatcgtcgaggcgcgcgag
gccgacgggccgttcgccgatctgttcgacttctgccggcgggtcgatcccaagcgcatg
aacaagcgcaccctggaggcactgatccgctcgggagcgctggacaacctggggcccaac
cgggcggtgctggccgccgcgctcgacgatgccctgcgcgccgcggcccagacccagacc
aaccagaacctgggcatgatggacatgttcggcgaggccttcgccgacgccgcggtcgag
agcgacccctacgaggcctatcgccgcgcccgcgagtggaccgacaaggagcgcctggcc
ggcgaaaaggagaccctcgggctctatctcaccggacaccccatcgacgagtacgagaag
gagctggcacgtttcgtctccacgcgcatcagcgacctcaagccctcgcgcgagccgcag
cgggtggcgggcctggtggtggccatgcgcaccatgaagtccaagcgcggtgacaccatg
gccttcatcaccctggacgaccgcaccgggcgcatcgaggcgtcgctgttcggcgagctg
ttcgactccctgcgcggccagatcgaggccgaccaggtgctgatcgtcgagggcgaggtc
tccagcgacgacttctccggtggcctgcgcctgcgcggtaaggatgtcacgccgatggtg
gccgctcgcgcccgctacggcgaagcggtggagctgtcgctggacggcactcgggtcaac
ggccggctgatcgacaccctacgcgacagcctggcgccgcaccgcgacgacggcggcctg
ccggtacgcctgcgctaccgcaacgacgcggccgccggctggctggaactggacggccag
tggcgggtgtcgccctgcgacgagctgctgatcgcgctgcgtgaagtagaggggcaggat
ggcgtgcggctgaagtaccgctga
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