Halomonas sp. MCCC 1A13316: HNO52_04525
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Entry
HNO52_04525 CDS
T10913
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hamc Halomonas sp. MCCC 1A13316
Pathway
hamc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hamc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HNO52_04525 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hamc03019
]
HNO52_04525 (rnr)
03016 Transfer RNA biogenesis [BR:
hamc03016
]
HNO52_04525 (rnr)
Enzymes [BR:
hamc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HNO52_04525 (rnr)
Messenger RNA biogenesis [BR:
hamc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HNO52_04525 (rnr)
Transfer RNA biogenesis [BR:
hamc03016
]
Prokaryotic type
tRNA degradation factors
HNO52_04525 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
QOR37848
UniProt:
A0A7M1Q8R7
LinkDB
All DBs
Position
955903..958308
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AA seq
801 aa
AA seq
DB search
MTHWTLSDDPHASREAHKYDKPAPSREYLLARLEEYGKPITHESMSRMLGLEDEELQEAV
RRRLAAMERDGQVLRNRAGAYALIDKLDLIKGKVLGHRDGFGFVLREDGKKPDLVLPPRQ
MRRVFHGDYVLVRVSGRDRRGRDEATIAEVLARNTQTIVGVFRENTSEFGVLIPENPRIT
QEVIIPHSACGGARDGQVVSARIVQQPDTRVQPVGEVVEVLGERMDPGMEIDIAIRSYEI
PAEFPPEVHDQIAEMSAEVAEQDKQHRIDLRHIPLVTIDDETAKDFDDAVCAWKTKSGSW
KLIVAIADVSHYVRPGTPLDEEAIRRGNSVYFPGQVVPMLPELLSNGLCSLNPHVDRLAM
VCEMNISKSGVISRYHFYEAVFQSHARLTYNKVAAILDGDDAEADALREEYRDLTKPLQG
LHELYRVLRQAREERGAIDFETTETAILFNEERKIEKIVPRKRNDAHKIIEECMLAANVA
TARFLDKHDLPALYRIHERPSPERLDKLRLFLNELGLSVGGGDEPTPQDYQALAEAIRGR
PDADVIQTVMLRSMSQAVYSPQNEGHFGLAYPAYAHFTSPIRRYPDLLVHRAIRSVVRGP
RQTNTVLRAEGAKVDPPSKWCPYTFEQMLELGEHCSMTERRADDATRDVEDWLKCEFMSD
KLGEVYEGTIASVTQFGIFVRLDEVYVEGLVHVTSLPSDYYHYEPEKHRLKGERTGMSYR
LGDGVTVQVARVDLNDRKIDFALEDDKPRPKREPRKRRGGGEASFTPRPDAGKAAADDKG
ERGKGKGGKRRRGPRKPKARG
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atgactcattggacgctcagcgacgacccccatgccagccgcgaggcccacaagtacgac
aagccggcgcccagccgcgagtacctattggcgcgcctggaggagtacggcaagccgatc
acgcacgaatccatgagccgcatgctgggccttgaggacgaggagctgcaggaggccgtg
cgccgacgcctggcggccatggagcgcgacgggcaggtgctgcgcaatcgcgccggcgcc
tacgccctgatcgacaagctcgatctgatcaagggcaaggtgttggggcatcgcgacggc
ttcggcttcgtactgcgtgaggacggcaagaagcccgacctggtactaccgccgcgccag
atgcgtcgagtcttccacggcgactacgtgctggtgcgcgtcagcggccgtgatcgccgt
ggccgcgacgaggccaccattgccgaagtgctggcgcgcaatacccagaccatcgtcggc
gtgttccgcgagaacacctccgagttcggcgtgctgatccccgagaatccgcgcatcact
caggaagtgatcattccccacagtgcctgcggcggtgctcgggacggccaggtggtatcg
gcccggatcgtgcagcaacccgacacgcgggtgcagccggtgggcgaagtggtcgaggtc
ctgggtgagcgcatggaccccgggatggaaatcgacatcgccatccgcagttacgagatt
ccggccgagttcccccccgaggtgcacgaccagatcgccgagatgtccgccgaagtggcc
gagcaggacaagcagcatcgcatcgaccttcgccatatcccgttggtcaccatcgatgac
gaaacggccaaggacttcgatgacgccgtgtgcgcttggaagaccaagtccggtagctgg
aagctgatcgtcgccatcgccgacgtgtcgcactatgtgcgtccgggcacaccgctcgac
gaggaggcgatccgtcgcggcaattcggtctacttcccgggacaggtggtgccgatgctg
cccgagctgctctccaatggtctgtgctcgctcaacccgcacgtcgaccgcctggcgatg
gtctgcgagatgaacatctccaagagcggggttatcagccgctaccacttctatgaggcg
gtgttccagtcgcacgctcgcctgacatacaacaaggtggcggcgatcctcgacggcgac
gatgccgaggcggatgccttgcgcgaggagtaccgcgacctgaccaagccgctccagggt
ctgcacgagctctaccgtgtgctgcggcaagcccgcgaagagcgcggcgccatcgacttc
gagaccaccgagacggccatactcttcaacgaagagcgcaagatcgagaagatcgtgccg
cgcaagcgcaacgatgcccacaagatcatcgaggagtgcatgctggcggccaacgtcgcc
actgcacgctttctcgacaagcacgatctgccggcgctttaccgtatccacgaacggccc
tcgccggaacggctcgacaagctgcggctgttcctcaatgagctgggcctgtcggtcggc
ggtggcgacgagcccacgccgcaggactatcaggcgctggccgaggcgattcgtggccgc
ccggacgccgacgtgatccagaccgtgatgctgcgctccatgagccaggcggtctattcg
ccgcagaacgaggggcacttcggcctggcctatccggcctacgctcacttcacctcgccg
atccgccgctatcccgacctgctggtgcaccgtgcaattcgctcggtggtccgcgggccg
cgccagaccaataccgtactgcgcgccgagggagccaaggtcgatccgccgagcaagtgg
tgcccctataccttcgagcagatgctcgagctcggcgagcactgctcgatgaccgagcgc
cgcgccgacgacgccacccgcgacgtcgaagattggctcaagtgcgagttcatgtccgac
aagctcggcgaggtctatgaaggtaccattgcctcggtgacccagttcggtatcttcgtg
cgcctcgacgaggtctacgtcgagggtctggtacacgtcacctcgttgccctcggattat
taccactacgaacccgagaagcatcgtctcaagggcgagcgtaccggtatgagttatcgt
cttggcgatggcgtcacggtgcaagtggcacgtgtagacctgaacgatcgcaagatcgac
ttcgccctcgaggacgacaagccgcgacccaagcgtgagccgcgcaagcgccgtggcgga
ggcgaggcgtccttcacgcccaggcccgacgctggcaaggctgcggccgacgacaagggc
gagcgcggcaagggtaagggcggcaagcgccgtcgcggcccgcgcaagccgaaggcgcgc
ggctga
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