Halomonas sp. MCCC 1A13316: HNO52_06070
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Entry
HNO52_06070 CDS
T10913
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hamc Halomonas sp. MCCC 1A13316
Pathway
hamc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hamc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HNO52_06070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hamc03019
]
HNO52_06070
03009 Ribosome biogenesis [BR:
hamc03009
]
HNO52_06070
Enzymes [BR:
hamc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HNO52_06070
Messenger RNA biogenesis [BR:
hamc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HNO52_06070
Ribosome biogenesis [BR:
hamc03009
]
Prokaryotic type
rRNA helicases
HNO52_06070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
CMS1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QOR38121
LinkDB
All DBs
Position
1290428..1292152
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AA seq
574 aa
AA seq
DB search
MTSTSVASPSFGDLALLPAVLAAVETLGYETPSPIQTQTIPALLEGRDMLGQAQTGTGKT
AAFALPLLSRLELTRREPQVLVLAPTRELAQQVAVSFSKYGQNLQGLEVATLCGGQEYRE
QLGALKRGAQVVVGTPGRVIDHLDRGSLKLDGLSALVLDEADEMLRMGFIDDVKRVVADT
PKEAQRVFFSATLPTEIERIVNRYLVDPVKVAIESRTTTGENIEQRLVRVDGGAKLEALS
RILEVEAVDAAIVFVRTRAACTTLMEQLSARGVNVASLSGDLDQSLRERTIQRLKRGKVD
VLIATDVAARGLDVPRITHVFNYDLPQDAEAYTHRIGRTGRAGRTGISITFVGFREGRKV
GWIEQATGQKLSEMEVPDEAAIRAHRDEVFHQRIIGSLTGGADEQRALVERLVAEGHDPV
ELACAFAALARADEAPIGRLQAPRKERVERGGERASRDGKPPRRERDSRGPSEGMTRYRV
AVGHKDGVKPGQLVGALANEGGIEGSRIGRIDIRNAFSVVELPSSLPPSILAKMARARVA
GRPLEISEDGGAPERAPRRRREDGDAPVRRRTSA
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgacttctgtcgcttcgccgagcttcggcgatcttgctctgctgcctgccgtt
ctcgccgctgtcgaaacactgggttacgaaactccatctccgattcagacacagaccatt
ccggcactgctggaagggcgtgacatgctgggccaggcccagaccggtaccggcaagacc
gcggcattcgccttgccgctgctgtcgcggctcgagctgactcgccgcgagccccaggtg
ctggtgctggcgcctactcgtgaactggcccagcaggtggccgtctctttcagcaagtac
ggccagaacctgcagggtctggaagtcgccactctgtgcggtggccaggaatatcgtgaa
cagctgggtgcgctgaagcgtggcgcacaggtggtggtgggcacgccgggccgggtgatc
gatcacctcgaccgtggcagcctcaagctcgacggtctctccgccctggtgctggacgaa
gccgacgagatgctgcgcatgggcttcatcgacgacgtcaagcgtgtcgtcgccgatacc
cccaaggaagctcagcgggtgttcttctccgccaccctgccgaccgagatcgagcgcatc
gtcaaccgctacctggtcgacccggtcaaggtcgcgatcgagtcgcgcaccaccaccggc
gagaatattgagcagcgcctggtgcgcgtcgacggcggcgccaagctggaggcgctgtcg
cgcatcctcgaggtcgaggcggtggatgctgccatcgtcttcgtgcgcacccgggctgcc
tgtaccacattgatggagcagctctccgcgcgtggcgtgaacgtggccagcctctcgggc
gacctcgaccagagcctgcgcgagcgcaccattcagcgtctcaagcgcggcaaggtcgac
gtgctgatcgccaccgacgtggccgcccgcggcctcgacgtgccgcgcatcacccacgtc
ttcaactatgacctgccccaggatgccgaggcctacacccaccgtatcggccgtaccggc
cgggccgggcgtaccggtatctcgatcaccttcgtcggcttccgcgaaggccgcaaggtg
ggctggatcgagcaggccaccggccagaagctcagcgaaatggaagtgcccgacgaggcc
gccattcgcgctcatcgtgacgaagtattccatcagcgcatcatcggcagcctgaccggc
ggtgccgacgagcagcgcgcactggtcgagcgcctggtggcggaaggtcacgatccggtg
gagctggcctgtgcctttgccgccctggcgcgtgccgacgaagcgcccatcggtcgcctg
caggcgccgcgcaaggagcgtgtcgagcgtggtggtgagcgtgcatcgcgtgacggcaag
ccgccgcgtcgtgagcgtgacagccgcggcccgagcgaaggcatgacccgctaccgcgtt
gccgtcggccacaaggatggcgtaaagccgggccaactggtcggcgcgttggccaacgag
ggtggcatcgaaggttcgcggatcggccgtatcgatatccgcaacgccttctcggtggtg
gaactgccgagttcgcttccgccgagcatcctggccaagatggcgcgtgcccgcgtcgct
ggccgcccgctggagatcagcgaggacggcggtgcccccgagcgtgctccgcgccgtcgc
cgcgaagacggtgatgcaccggtgcgtcgccgcaccagcgcttaa
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