Halomonas sp. MCCC 1A13316: HNO52_07770
Help
Entry
HNO52_07770 CDS
T10913
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hamc Halomonas sp. MCCC 1A13316
Pathway
hamc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hamc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HNO52_07770 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hamc03019
]
HNO52_07770 (rne)
03009 Ribosome biogenesis [BR:
hamc03009
]
HNO52_07770 (rne)
Enzymes [BR:
hamc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HNO52_07770 (rne)
Messenger RNA biogenesis [BR:
hamc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HNO52_07770 (rne)
Ribosome biogenesis [BR:
hamc03009
]
Prokaryotic type
rRNA processing factors
HNO52_07770 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QOR38414
UniProt:
A0A7M1Q9U3
LinkDB
All DBs
Position
complement(1666553..1669816)
Genome browser
AA seq
1087 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRVEPSLEAAFVDF
GADRHGFLPLKEISREYFLKDTSGRPSIKEVLKEGQEVIVQVDKEERGNKGAALTTFISL
AGRFLVLMPNNPRAGGISRRIEGEERTQLKEAMGQLTVPEKMGVIVRTAGIGRSSEELQW
DLNYLVQVWESITEEAGKRQAPFLIYRESDVIIRAMRDYLRQDIGEVLIDDPTVHQRALA
FIRQVMPSYQQKIKLYADEVPLFSRFQIESQIETAYEREVKLPSGGSIVIDHTEALVSID
INSARATRGSDIEETALQTNLEAADEIARQLRLRDIGGLVVIDFIDMSPARNQREVENRM
RDALKLDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCNGQGTIRDVRSLSLSI
MRLIEEEAMKERSAQIRAILPVPVATYLLNEKRSVLADIEKRQGVRVLVLPNPDMDTPHY
DVQRLRDDHIEEEGEQDKSSFELSVDTEIGKEPDTSIAKPVARTEAAVKTVIHNEPAPAS
LQQEPAPQPSPTAATPTAAPTGAAPASGVLGRLLKGVSKLLGGGESDTSTSQQPRKPVTP
PQSRSSEEERGERNGRQRRRSRGDAQDDNRSQRGQTRQQENARSDSRQEARQDNATGRSE
GRVEGRSEGRGGRGRNQARADKPQASEEGRQGSKPRSRDEAPRRQKAEPQEKPAEQAAEP
TRADDGKPKRTRNNPRNRTRQHAINPQAEAEQKRLQAGEQAELATDEAEVEQAKAESPKS
VEKPAEPVKAEQPKPDAPKPTEKPAEPVKAEQPKPDQAKVDAPKPVEKPAEPVKAEQPKA
DQAKVDAPKPVEKPAEPVKTEQPKADQAKVDAPKPAEKPAEPVKAEQPKADQAKVDAPKP
AEKPAEPVKAEQPKADQAKVDAPKPVEKPAEPVKAEQPKADQAKVDAPKPVEKPAEPVKA
EQPKADQAKFDAPKPAEKPAEPVKAEQPKADQAKVDAPKPVEKPAEPVKAEQPKADQAKV
DAPKPAEKPAEPVESKQPEQAEAEAPESEEKPAVEESPAAARRRRRAHNDPREIRRREQE
AHKGNQG
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctcatcaatgcgacccagcccgaagagctgcgcgtcgcgctggtagac
ggacaacgcctgtatgacctggacatcgaatcgggtgccagggagcaaaagaaagccaat
atctatcgcggcaagattacccgcgtcgagccctccctcgaagccgccttcgtcgacttc
ggggccgatcgtcacggctttctccctctcaaggagatctcccgcgaatacttcctgaag
gacacctcggggcgccccagcatcaaggaggtgctcaaggagggtcaggaagtcatcgtg
caggtcgacaaggaggagcgcggcaacaagggtgcggcgctgaccactttcatcagcctg
gccggccgcttcctcgtgctgatgcccaacaatcctcgcgccggcggtatctcacggcgc
atcgagggcgaagagcgcacccagctcaaggaagccatgggccagctcacggtaccggag
aagatgggcgtgatcgtgcgcaccgccggtatcggccgcagcagcgaggagctgcagtgg
gacctcaattacctggtccaggtgtgggagtcgatcaccgaggaggccggcaagcgccag
gcgcctttcctgatctatcgcgaatcggatgttatcattcgtgccatgcgcgactacctg
cgccaggacatcggcgaggtgctcatcgatgatccgacggtgcatcagcgcgccctggct
ttcattcgccaggtcatgccctcgtaccagcagaagatcaagctctacgccgatgaagtc
ccgctgttctcgcgcttccagatcgaatcccagatcgagaccgcctacgagcgtgaagtg
aaactgccctccggtggttccatcgtcatcgaccacaccgaggccctggtctccatcgat
atcaactcggcgcgcgccacccgtggcagcgacatcgaggaaaccgcgctgcagaccaat
ctcgaggcggccgatgagatcgcccgccagttgcgcctgcgtgacatcggcggtctggtg
gtgatcgatttcatcgacatgagcccggcgcgcaatcagcgtgaggtcgagaatcgcatg
cgcgacgcgctcaagctcgaccgcgcccgcgtacagatcggtcgcatctcgcgcttcggc
ctgatggaaatgtcgcgccagcgcctgcgcccgtcgctgggcgaaaccagcggcgtggtc
tgcccgcgctgcaacggccagggcaccattcgcgacgtgcgctcgctgtcgctgtcgatc
atgcgcctgatcgaagaagaggcgatgaaggagcgcagcgcccagatccgcgccattctg
ccggtgccggtcgccacttacttgctcaacgagaagcgctcggtactcgccgacatcgag
aagcgccagggtgtgcgcgtcctcgtgttgcccaatcccgacatggacacgccgcactac
gatgttcagcgcttgcgcgacgatcatatcgaggaggaaggcgagcaggacaagtccagc
ttcgagctgtcggtagataccgaaatcggcaaggagccggacaccagcatcgccaagccg
gtcgcccgcaccgaggcggccgtcaagacagttattcacaacgagccggccccagcctca
ctgcaacaggagccggccccgcagccctctcctacggctgccaccccaactgccgcccct
acgggcgcagccccggcttctggcgtactcggtcgcctgctgaagggtgtcagcaagttg
ctcggcgggggcgaaagcgatacatccacttcgcagcagccccgcaagccggtcacacct
cctcagtctcgcagcagcgaggaagagcgtggcgagcgcaacggtcgccagcggcgtcgc
tcgcgtggcgacgcccaggatgacaaccgcagccaacgcggccagactcgccaacaggaa
aacgcccgcagcgactcacgccaggaggcgcgccaggacaacgcaactggccgtagtgaa
ggtcgtgttgaaggccgcagcgaaggacgcggcggtcgcggtcgcaaccaggcgcgtgcc
gacaagccccaggctagcgaagagggacgtcagggcagcaagccacgcagccgtgacgaa
gctcctcgtcgccagaaggccgagccccaggaaaaacccgccgagcaggcggccgaaccg
accagagccgatgatggcaagcccaagcgtacgcgcaacaacccgcgtaaccgcacacgt
cagcatgccatcaatccgcaggccgaagccgagcagaaacgactgcaggcaggcgagcag
gcggaactcgccaccgacgaggcagaggtcgagcaagccaaggctgaatcacccaagtcg
gtagagaagcccgccgagccggtcaaggccgagcagcccaagccggatgcgcccaagccg
acggagaagcccgccgagccggtcaaggccgagcagcccaagccggatcaggccaaggtc
gacgcacccaagccggtggagaagcctgccgagccggtcaaggccgagcagccgaaggcg
gatcaggccaaggttgacgcgcccaagccggtggagaagcctgccgagccggtcaagacc
gagcagccgaaggcagatcaggccaaggtcgacgcgcccaagccggcggagaagcccgcc
gagccggtcaaggccgagcagccaaaggcagatcaggccaaggtcgacgcgcccaagccg
gcggagaagcccgccgagccggtcaaggccgagcagccgaaggcagatcaggccaaggtc
gacgcgcccaagccggtggaaaagcctgccgagccggtcaaggccgagcagccgaaggcg
gatcaggccaaggtcgacgcacccaagccggtggaaaagcctgccgagccggtcaaggcc
gagcagccgaaggcggatcaggccaagttcgacgcgcccaagccggcggagaagcccgcc
gagccggtcaaggccgagcagccgaaggcggatcaggccaaggtcgacgcgcccaagccg
gtggaaaagcctgccgagccggtcaaggccgagcagccgaaggcagatcaggccaaggtc
gacgcgcccaagccggcggaaaagcctgccgagccggtggagtcaaagcaaccggaacag
gccgaggcagaagctcctgagtcggaggaaaaacctgccgtcgaagagtcgcctgcagcc
gctcgtcgacgccgccgcgcgcacaatgacccgcgcgagatacgtcggcgcgagcaggaa
gcgcataaaggcaaccagggctga
DBGET
integrated database retrieval system
