KEGG   Halomonas sp. MCCC 1A13316: HNO52_09525
Entry
HNO52_09525       CDS       T10913                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
hamc  Halomonas sp. MCCC 1A13316
Pathway
hamc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hamc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HNO52_09525
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hamc03019]
    HNO52_09525
Enzymes [BR:hamc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     HNO52_09525
Messenger RNA biogenesis [BR:hamc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     HNO52_09525
SSDB
Motif
Pfam: DEAD Helicase_C AAA_19 ResIII P-loop_SecA HI1480 DegT_DnrJ_EryC1 Sacchrp_dh_NADP AAA_22 Gag_p24
Other DBs
NCBI-ProteinID: QOR38724
UniProt: A0A7M1QAP9
LinkDB
Position
complement(2051099..2052406)
AA seq 435 aa
MTLFSDLGLRAELLRAVEAQGYTTPTPIQLQAIPAVLKGGDLLASAQTGTGKTAGFTLPM
LQRLADGPRPGKRQVRALVLTPTRELAAQVGESVADYGRHLTLKSHVIFGGVGQQPQVDA
IRPGLDVLVATPGRLLDLQQQKHVDLSKVEILVLDEADRMLDMGFIHDIKKVLRVLPAKR
QNLLFSATFSDEIQTLAAKLLDNPEKISVARRNTTAETVDQAIYRVDREKKRELLAHLIT
RHAWHQVLVFTRTKHGANRLAEQLSKQDIPAMAIHGNKSQSARTKALSAFKSGDLQVLVA
TDIAARGLDINELPHVVNFELPNVAEDYVHRIGRTGRAGSEGQAVSLVCVDEHGLLKGIE
RLIKRDLDKHIEPGFEPDPNAKPEPIENGRNRRSGQARQGGAGRGQSGQRSGNSAGGDAQ
APRRRRSRGQGTRRA
NT seq 1308 nt   +upstreamnt  +downstreamnt
atgaccctcttttccgatctcggcctgcgggccgaactgctgcgtgccgtcgaggcgcag
ggctacaccacgccgaccccgatccagctccaggccattcctgccgtgctcaagggcggc
gacctgctcgccagcgcccagaccggcaccggcaagacagccggcttcaccctgccgatg
ctgcagcgcctggccgatggcccacgccccggcaaacgtcaggtacgcgccctggtgctg
actcccacccgcgagcttgcggcccaggtaggcgagagcgttgccgactacggccgtcac
ttgaccctgaagagccacgtgatcttcggtggcgtcggccagcaaccccaggtggatgcc
attcgtcccggcctcgacgtgctggtggcaactcccggccgcctgctcgacctgcagcag
caaaaacacgtcgacctctccaaggtggagatcctggtgctcgatgaagccgaccgcatg
ctagacatgggcttcatccacgacatcaagaaagtgctgcgtgtgctgcccgcaaagcgc
cagaatctgctgttctcggccaccttctccgacgagatccagacgctggccgccaagctg
ctcgataatcccgagaagatatcggtggcccgacgcaacacgacagcggaaacggtcgat
caggcgatctatcgcgtcgatcgggagaagaagcgcgaactgctggcccatctgatcacc
cggcatgcctggcatcaggtgctggtcttcacccgcaccaagcacggtgccaaccgcttg
gccgagcagctctccaagcaggacatcccggccatggcgatccatggcaacaagagccag
tcggcacgcaccaaggcgctgtcagcattcaagagcggcgatctgcaggtgctggtggcg
accgacatcgccgcccgaggcctggacatcaatgaactgcctcacgtggtcaacttcgag
ttgcccaacgtcgccgaggattacgttcaccgcattggccgcaccggccgtgccggcagc
gaaggccaggccgtctcactcgtctgcgtcgacgagcacggcctgctgaagggtatcgag
cggctgatcaagcgcgaccttgataagcacatcgaacccggcttcgagcccgatccgaac
gccaagcccgagccgatcgagaacggtcgtaaccgccgcagcggccaggctcgccagggt
ggcgccggccgcggccagtcggggcagcgcagcggtaactcggccggcggcgatgcccag
gcaccgcgtcggcggcgcagccgcgggcagggcactcgccgcgcctga

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