Halomonas sp. MCCC 1A13316: HNO52_09525
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Entry
HNO52_09525 CDS
T10913
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hamc Halomonas sp. MCCC 1A13316
Pathway
hamc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hamc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HNO52_09525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hamc03019
]
HNO52_09525
Enzymes [BR:
hamc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HNO52_09525
Messenger RNA biogenesis [BR:
hamc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HNO52_09525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
ResIII
P-loop_SecA
HI1480
DegT_DnrJ_EryC1
Sacchrp_dh_NADP
AAA_22
Gag_p24
Motif
Other DBs
NCBI-ProteinID:
QOR38724
UniProt:
A0A7M1QAP9
LinkDB
All DBs
Position
complement(2051099..2052406)
Genome browser
AA seq
435 aa
AA seq
DB search
MTLFSDLGLRAELLRAVEAQGYTTPTPIQLQAIPAVLKGGDLLASAQTGTGKTAGFTLPM
LQRLADGPRPGKRQVRALVLTPTRELAAQVGESVADYGRHLTLKSHVIFGGVGQQPQVDA
IRPGLDVLVATPGRLLDLQQQKHVDLSKVEILVLDEADRMLDMGFIHDIKKVLRVLPAKR
QNLLFSATFSDEIQTLAAKLLDNPEKISVARRNTTAETVDQAIYRVDREKKRELLAHLIT
RHAWHQVLVFTRTKHGANRLAEQLSKQDIPAMAIHGNKSQSARTKALSAFKSGDLQVLVA
TDIAARGLDINELPHVVNFELPNVAEDYVHRIGRTGRAGSEGQAVSLVCVDEHGLLKGIE
RLIKRDLDKHIEPGFEPDPNAKPEPIENGRNRRSGQARQGGAGRGQSGQRSGNSAGGDAQ
APRRRRSRGQGTRRA
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgaccctcttttccgatctcggcctgcgggccgaactgctgcgtgccgtcgaggcgcag
ggctacaccacgccgaccccgatccagctccaggccattcctgccgtgctcaagggcggc
gacctgctcgccagcgcccagaccggcaccggcaagacagccggcttcaccctgccgatg
ctgcagcgcctggccgatggcccacgccccggcaaacgtcaggtacgcgccctggtgctg
actcccacccgcgagcttgcggcccaggtaggcgagagcgttgccgactacggccgtcac
ttgaccctgaagagccacgtgatcttcggtggcgtcggccagcaaccccaggtggatgcc
attcgtcccggcctcgacgtgctggtggcaactcccggccgcctgctcgacctgcagcag
caaaaacacgtcgacctctccaaggtggagatcctggtgctcgatgaagccgaccgcatg
ctagacatgggcttcatccacgacatcaagaaagtgctgcgtgtgctgcccgcaaagcgc
cagaatctgctgttctcggccaccttctccgacgagatccagacgctggccgccaagctg
ctcgataatcccgagaagatatcggtggcccgacgcaacacgacagcggaaacggtcgat
caggcgatctatcgcgtcgatcgggagaagaagcgcgaactgctggcccatctgatcacc
cggcatgcctggcatcaggtgctggtcttcacccgcaccaagcacggtgccaaccgcttg
gccgagcagctctccaagcaggacatcccggccatggcgatccatggcaacaagagccag
tcggcacgcaccaaggcgctgtcagcattcaagagcggcgatctgcaggtgctggtggcg
accgacatcgccgcccgaggcctggacatcaatgaactgcctcacgtggtcaacttcgag
ttgcccaacgtcgccgaggattacgttcaccgcattggccgcaccggccgtgccggcagc
gaaggccaggccgtctcactcgtctgcgtcgacgagcacggcctgctgaagggtatcgag
cggctgatcaagcgcgaccttgataagcacatcgaacccggcttcgagcccgatccgaac
gccaagcccgagccgatcgagaacggtcgtaaccgccgcagcggccaggctcgccagggt
ggcgccggccgcggccagtcggggcagcgcagcggtaactcggccggcggcgatgcccag
gcaccgcgtcggcggcgcagccgcgggcagggcactcgccgcgcctga
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