Halomonas sp. MCCC 1A13316: HNO52_12940
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Entry
HNO52_12940 CDS
T10913
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hamc Halomonas sp. MCCC 1A13316
Brite
KEGG Orthology (KO) [BR:
hamc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hamc03032
]
HNO52_12940 (topA)
03400 DNA repair and recombination proteins [BR:
hamc03400
]
HNO52_12940 (topA)
Enzymes [BR:
hamc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HNO52_12940 (topA)
DNA replication proteins [BR:
hamc03032
]
Prokaryotic type
DNA Topoisomerases
HNO52_12940 (topA)
DNA repair and recombination proteins [BR:
hamc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HNO52_12940 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
DUF6950
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
QOR39320
UniProt:
A0A7M1QBU6
LinkDB
All DBs
Position
complement(2808541..2811168)
Genome browser
AA seq
875 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGSEFIVKSSVGHIRDLPTSGSGKAASDPKERARQAAATR
KMSPEEKAEYKKHKAKDQLVRRMGIDPEHGWKAHYEILPGKEKVVSELQKLAEKADTVYL
ATDLDREGEAIAWHLKETIGGADERYRRVVFNEITKNAIKEAFKEPGTLNVPRVEAQQAR
RFLDRVVGFMLSPLLWAKIARGLSAGRVQSVAVRLIVEREREIRAFVPEEFWDVHADLVS
KDGEPVRFELVRQDGKAFRPTSEAETLERIERLRKASLAITAREDKPTRSKPNAPFITST
LQQAASGRLGFSVKKTMTLAQRLYEAGYITYMRTDSTNLSQDAVAMAREHIEQEYGKRYL
PESPNRYSSKEGAQEAHEAIRPSDVNRMASDLAGMERDAERLYELIWRQFVACQMTPAEY
LSSTLTVEADGYELKAKGRVLKFDGYTRVMKPAGKNEDQALPDLAEGTSMRLEALDPQQH
FTKPPARYTEASLVKELEKRGIGRPSTYASIISTIQDRGYVKLESRRFYAEKLGDIVTER
LKESFPDLMDFSFTARMEDSLDEVAEGERNWRELLDAFYAEFREELEAAESEEGMRPNQP
VPTDIDCPTCGRKMQIRTASTGVFLGCSGYNLPPKERCKTTIDLLPGDEAVPADAGEEAE
TQALRAKHRCPKCGTAMDSYLIDENRKLHICGNSPDCDGYEIEQGKFRIKGYEGPTIECD
KCGSEMQLKSGRFGKYFGCSNESCKNTRKLLRSGEVAPPKMDPIAMPELACQKVDDHYVL
RDGASGLFLAASKFPRNRETRPPLVQELKAHAEELPEKYHYLLEAPSEDPEGRPAQIRYS
RKSKEQFVMTEEEGKATGWRATYDNGRWQVEDKRK
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgggcaagtcattggtcatcgtcgagtcgccggccaaggccaagacgatcaacaagtat
ctcggcagcgagttcatcgtgaagtcgagcgtgggtcatatccgtgacctgccgaccagc
ggctcgggcaaggcggcttcagatcccaaggagcgcgcgcgccaggcagcggcaacgcgc
aagatgtcgcccgaggagaaggccgagtacaagaagcacaaggccaaggatcaactcgtg
cggcgcatgggtatcgatccggagcatggctggaaggcccactatgagattctgcccggc
aaggaaaaggtcgtctccgagctgcagaagctcgccgagaaggccgataccgtctatctc
gcgaccgatctcgaccgcgagggggaggccatcgcctggcatctcaaggagaccatcggc
ggcgccgacgagcgttatcgccgtgtggtcttcaacgagatcaccaagaatgccatcaag
gaggcattcaaggagcccggcacgctcaacgttccccgcgtcgaggctcaacaggccagg
cgcttcctcgatcgcgtggtgggtttcatgctgtcgccgctgctgtgggcgaagatcgcc
cgcggcctctcggctggccgggtacagtcggtggcggtgcgcttgatcgtcgaacgcgag
cgcgagatacgcgccttcgttcccgaagagttctgggacgtgcatgccgatctcgtctcg
aaggatggcgagccggtgcgtttcgaactggtgcgccaggacggcaaggccttccggccc
acttcggaagccgagacgctcgagcgtatcgagcggctgcgcaaggcaagccttgccatc
acggcgcgtgaggacaagcccacccgttcgaagcccaatgctcccttcattacctcgacc
ctgcagcaggccgccagcgggcgactcggcttctcggtgaagaagaccatgacgttggcc
cagcgcctctacgaggcgggctacatcacctacatgcgtaccgattccaccaatctgtcg
caggatgcggtggccatggcgcgagagcatatcgagcaggagtacggcaagcgctacctg
cccgagtcgcccaaccgctactcgagcaaggagggcgctcaggaggcccacgaggcgatc
cgcccctccgacgtcaatcgcatggcctccgacctggccggtatggagcgtgacgccgag
cgcctctacgagctgatctggcgtcagttcgtggcctgccagatgacccctgccgaatac
ctctccagcaccctgaccgtggaagccgacggctatgagctcaaggccaagggccgggtg
ctcaagttcgacggctacacgcgggtgatgaagccggccggcaagaacgaggaccaggcg
ttgccggatctcgccgagggcacgtccatgcgactcgaggcgctcgacccccagcagcac
tttaccaagccaccggcccgctataccgaggcgagtctggtcaaggagctggagaagcgc
ggtatcggccgcccttcgacctatgcctcgatcatctccaccatccaggatcgcggctac
gtcaagctggagagccggcgtttctacgccgagaaactcggcgatatcgtcaccgagcgg
ctcaaggaatcctttcccgacctgatggatttctccttcaccgcgcgcatggaagatagc
ctcgacgaggtcgccgagggcgagcgcaactggcgtgaactgctggatgcgttctacgcc
gagtttcgcgaggagctcgaggcggccgagagcgaggagggcatgcggcccaaccagccg
gtgcccaccgatatcgactgtcccacctgtgggcgcaagatgcagatccgcacggcatcc
accggcgtgttcctgggctgctccggctacaacctgccgcccaaggagcgctgcaagacc
accatcgacctgctgcccggcgatgaggcggtacccgccgatgccggcgaagaggccgaa
acccaggcgctgcgcgccaagcatcgctgccccaagtgcggcacggcgatggacagctac
ctgatcgacgaaaaccgcaagctccacatttgcggcaatagccccgactgtgatggctat
gagatcgaacagggcaagtttcgtatcaagggctatgaaggcccaactatcgaatgtgac
aagtgcggcagcgagatgcagctcaagtcgggccgcttcggcaagtattttggttgcagc
aacgagtcgtgcaagaacactcgcaagctgctgagaagcggcgaggtggctccgccaaag
atggaccccattgcgatgccggagctggcctgccagaaggtagacgaccactacgtgcta
cgtgatggcgccagcggcctgttcctggcggcgagcaagttcccgcgcaatcgcgagacg
cgtcccccgctggtgcaggaactgaaggctcacgccgaagagctgccggagaaataccac
tatctgctcgaggcgccgagcgaggatccagagggtcgtccggcccagatccgctactcg
cgcaagagcaaggagcagttcgtcatgaccgaggaggagggcaaggcgaccggctggcga
gcgacctatgataacggtaggtggcaagtggaggacaagcgcaagtga
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integrated database retrieval system
