Halomonas sp. MCCC 1A13316: HNO52_17970
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Entry
HNO52_17970 CDS
T10913
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
hamc Halomonas sp. MCCC 1A13316
Brite
Transcription machinery [BR:
hamc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
HNO52_17970 (rapA)
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QOR40194
UniProt:
A0A7M1QFD2
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Position
3881026..3883968
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AA seq
980 aa
AA seq
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MSDFSPGQRWISDGEADLGLGTILSCDHRSVTVLFGASQETRTYSSRQAPLTRVAFGSGD
RIQAAEGWRLTVDDSKEVDGLIVYIGEDDQGELRELPEARLADSMQFDQARDRLLTGQVD
RNDWFDLRFRTLHHHHRIEQNPALGLSGPRIDLIPHQLYIADEVARRHAPRVLLADEVGL
GKTIEAGLILHRMLLTGRAERALILVPPSLTHQWLVELLRRFALDVTLLDEQQSLAQAEA
NPFESGQLILASQEWLFANPHRQEQAVACDWDLLIVDEAHHLDWSSEQVGPGYACVERLA
KTVPGVLLLTATPEQMGLESHFARLRLLDPDRYHSIDAFREEEQHYVEVAQAIDALENLS
AGGKGDRNCVAAVIDERDSLALLDLLTSPESSPEQQASARDQLREQLLDRHGTGRVMFRN
SRRHVGGFPERRLHLAEIPLPSAYRRVLRKLERDEDYLDELLIETGLDHPDVLIYPDATY
RELSDDPLNAEPWWQIDPRVNWLLERLADEGVQGFAGDKVLVIAHGRETAQGLAEALRVL
GGIHAPVFHEGLTLVERDRAAAAFADEEEGSQVLVCSEIGSEGRNFQFCRHLVMFDLPQH
PDQLEQRIGRLDRIGQRHTIEIHVPLFEASPGERLLRWFSEGMDAFDAPHGVGSELFDAF
GDALAEALLDDEALDDVIKETRALFESRLAQRDAGRNRLLELNACRPVRAGEVAAAIREL
DDDPALPRYLDQALDIFGVDGQELGGGLLHLQPSPQMLDGLPGLAKGEEGFTATLSRARA
LARDDVQRLSWEHPLLREMMGRILDGTMGNTALALLKHPAIPAGRLMSELVFRTYCPAPR
RLHVNRFLPPTAVRVLLDESGAVLSGKVSFSGLSKNLKKVKKAMARDLIRSRHDQLRELL
TQGEMEAERELPSIVEAAQLRMRRELDGELARLEALARLNPAVREEELEALRRERGELDA
AIDGTRLRLDAVRVIVTVGE
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacttttcacccggccagcgctggatcagcgatggcgaggccgaccttggcctg
ggcaccatcctgagttgcgatcaccgtagcgtcaccgtgctgttcggcgccagccaggaa
acccgcacctacagcagccgtcaggcgccactgacccgagtggccttcggcagcggtgac
cgtattcaggccgccgagggctggcgcctgaccgtcgacgacagcaaggaggtcgacgga
ttgatcgtctatatcggcgaggacgaccagggcgagctgcgcgaactgcccgaagcgcgc
ctggccgacagcatgcaattcgatcaggcccgcgatcgcttgctgaccggccaggtcgat
cgcaacgactggttcgacctgcgctttcgcactctgcaccaccatcatcgcatcgagcag
aatccggcactgggcctgtccggaccgcgcatcgacctgattccgcatcagttgtacatc
gccgacgaagtggcacgccgtcacgcgccgcgcgtgctgctcgccgacgaggtgggcctg
ggcaagaccatcgaagccggcctgatcctgcaccgcatgctgctcaccggacgtgccgag
cgcgctctgatcctggtgccgccgagcctgacgcaccagtggctggtggagctgctgcgg
cgattcgccctcgatgtgaccctgctcgacgagcagcagagcctggcccaggccgaggcc
aacccgttcgagtccggccaactgatcctggcaagccaagagtggctcttcgccaaccct
caccgtcaggagcaggcggtggcctgcgattgggacctgctgatcgtcgatgaggctcac
cacctcgactggagctccgagcaggtcggtcccggctacgcttgcgtcgagcgcctggcc
aagaccgtgccgggcgtgctgctgttgaccgccacccccgaacagatgggcctcgagagc
cacttcgcccgcctgcgcctgctcgaccccgatcgctaccacagcatcgatgcgttccgt
gaagaggagcagcactacgtggaggtggctcaggccatcgacgcgctggaaaacctgtcc
gcaggcgggaaaggcgatcgcaattgcgtggccgcggtgatcgatgagcgtgacagcctc
gccctgctggacctcctgaccagccccgagagcagtccggagcagcaagccagcgcccgc
gaccagcttcgcgagcagttgctcgaccgccatggcaccggcagggtgatgttccgcaac
agccgccgccatgtcggcggcttcccggagcgccgtctgcacctggcggagattccgttg
ccttcggcttaccgtcgggtgctgcgcaaactggagcgtgacgaagactatctcgacgag
ctgctgatcgagaccgggctcgaccaccccgacgtgctgatctaccccgatgccacctac
cgcgagctgtcggatgacccactcaacgccgagccctggtggcagatcgacccgagagta
aattggctgctggagcgcctcgctgatgaaggcgttcagggcttcgccggcgacaaggta
ctggtgatcgctcacggacgcgagaccgcacagggcctggccgaggcgctgcgcgtgctg
ggtggcatccatgccccggtgttccacgagggactgacgctggtcgagcgtgaccgtgcc
gcagcggcctttgccgatgaggaagaaggcagccaggtgctggtgtgctcggagatcggt
tcggaggggcgcaacttccagttctgccgacatctggtgatgtttgacctgccgcagcat
cccgaccagctcgagcagcgcatcggccgcctggatcgaatcggccagcgacacaccatc
gaaatccacgtgccgctgttcgaggccagccccggtgaacgcctgctgcgctggttcagt
gaaggaatggatgccttcgatgccccccacggcgtcggcagcgaactgttcgatgccttc
ggcgatgccttggccgaggccttgctcgatgacgaggcgctcgacgacgtcatcaaagag
acccgcgctctgttcgaaagccgcctggcccagcgcgatgccggccgcaaccgcttgctc
gaactcaacgcctgtcgcccggtgcgggccggagaagtggccgcggcgatccgtgaactc
gacgacgacccggcgctgccgcgctacctcgaccaggcgctggacatattcggcgtcgac
ggtcaggagctcggcggcggcctgttgcacttgcagcccagcccacagatgctagacggc
ctgcccggcctggccaagggcgaggagggcttcactgccaccctgtcgcgcgcgcgcgca
ttggcccgcgacgacgtgcagcggctctcctgggaacatccgctgctacgcgagatgatg
gggcgcatcctcgacggcaccatgggcaatactgctctggccctgctcaagcatccggcg
atacccgccgggcggctgatgtcggagctggtttttcgcacctattgccccgcccccagg
cggctgcatgtcaaccgcttcctgccgccgacagcggtgcgcgtactgctcgacgaatcc
ggggccgtgctcagcggcaaggtctcctttagcggtttgtcgaagaaccttaagaaggtc
aagaaagccatggcgcgagacctcattcgcagccgtcatgatcagttgcgcgaactgctc
acccaaggcgagatggaggccgagcgtgagctaccgagcatcgtcgaggcggcccagctt
cgcatgcgccgggaactcgatggcgagctggcccgcctggaggcgttggctcgcctcaac
ccggcggtgcgcgaggaggagttggaagcactacgccgtgagcgtggcgaactcgatgcc
gccatcgatggcactcggctgcggctggatgcggtgcgggtaatcgtcaccgtcggggag
taa
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