Halomonas sp. MCCC 1A13316: HNO52_20660
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Entry
HNO52_20660 CDS
T10913
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hamc Halomonas sp. MCCC 1A13316
Pathway
hamc03420
Nucleotide excision repair
hamc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hamc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HNO52_20660 (uvrD)
03430 Mismatch repair
HNO52_20660 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hamc03400
]
HNO52_20660 (uvrD)
Enzymes [BR:
hamc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HNO52_20660 (uvrD)
DNA repair and recombination proteins [BR:
hamc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HNO52_20660 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
HNO52_20660 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
AAA_12
Viral_helicase1
AAA_22
T2SSE
DEAD
Motif
Other DBs
NCBI-ProteinID:
QOR40667
LinkDB
All DBs
Position
complement(4440873..4443080)
Genome browser
AA seq
735 aa
AA seq
DB search
MDDVTAILDQLNPAQREAVSAPQGNMLVLAGAGSGKTRVLVHRIAWLMQAEGLSPYAVLA
VTFTNKAAREMRTRLEALLGLSLRNVWVGTFHSISHRLLRTHWQDARLPQHFQIIDSDDQ
LRLVKRLLKEHRVDDERFPPRQVQYFISGCKEEGLRPHQVDVHGDAYLAQMVELYERYQL
TCERGGLVDFGELLLRSLELLRDTPALLAHYQERFAHVLVDEFQDTNTLQYAWLKLLTGM
KTPMTVVGDDDQSIYGWRGARIENIRRFEREFSETKTVRLEQNYRSTSAILDAANALISH
NAERMGKELWTAGARGEPISVYAGFNDLDEARFIVDTIKEKVDEGYRRRDVAILYRSNAQ
SRVLEETLIRQGMPYRIYGGQRFYERLEIKNALAYLRLLLNRDDDASLERIVNVPSRGIG
TRTVEQLRERARLADVSLWQALHDGLADGSLKGRAGAALQAFADLVERLDNDTAGMALHE
IIAHVNEISGLVEHHQNEKGEKGQARVENLEELINAARAFTQGESFDPPEAGEGGVALEA
FLAEAALNAGDHEADEFEDSVQLMTLHSAKGLEFPVVFIAGVEEGLFPHKMSLEEPGRLE
EERRLCYVGLTRAMRKLYLTHSEIRRLHGKETFQRPSRFLREIPAEYLEEVRLRGQISRP
VTATRPAVGLSRQTSVDPGGDLPSLSLGQRVQHPVFGEGVILNAEGEGARARVQVSFEGE
GDKWLVLGFAKLTPL
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atggatgacgtcacggcgattctcgatcagttgaatccggctcagcgcgaggcggtgagc
gcgccccagggcaacatgctggtgctggccggggccggctcgggcaagacccgcgttttg
gtgcatcgcatcgcctggctgatgcaggccgaggggctgtcgccctatgccgttctggcc
gtgaccttcaccaataaggccgcgcgcgagatgcgtacccgcctcgaggcactgctgggg
ttgtcgctgcgcaacgtctgggtcggcactttccactccatctctcaccgcttgctgcgt
acccactggcaggatgcgcgactgccgcagcacttccagatcatcgactccgacgaccag
ctgcgcctggtcaagcgcctgctcaaggagcatcgagtcgacgacgagcgcttcccgccg
cgccaggtgcagtacttcatctccggctgcaaggaggaggggctgcgcccgcatcaggtc
gacgtgcatggcgacgcctacctggcccagatggtcgagctctacgagcgctaccagttg
acgtgtgagcgcggtggcctggtcgatttcggcgaactgctgctgcgaagcctcgaactg
ctgcgcgacaccccggcgctgctggctcactaccaggagcgcttcgcccacgtgctggtc
gacgagttccaggataccaacaccctgcagtacgcctggctcaagctgctcaccgggatg
aagacgccgatgaccgtggtcggcgacgacgatcaatccatctatggctggcgcggggcg
cggatcgagaacatccgtcgcttcgagcgggagttctccgagacgaaaacggtacgactg
gagcagaactaccgctccaccagcgccattctcgatgccgccaacgcgttgatcagccac
aacgccgagcgcatgggcaaggagctctggacggccggggcgcgcggcgagccgatctcg
gtgtatgccggcttcaacgatctcgacgaggcgcgtttcatcgtcgacaccatcaaggag
aaagtcgacgagggctaccggcgccgagacgtggccatcctctaccgctccaacgcccag
tcgcgggtgctcgaggagacactgatccgccagggcatgccctatcgcatctacggcggc
cagcgtttctacgagcgtctcgagatcaagaatgcgctggcctacctgcggttgttgctc
aaccgagacgacgatgcttcgctggagcgcatcgtcaacgtgccgtcacgcggcatcggt
acccgaactgtggaacagctgcgcgagcgtgcccggctggccgacgtgtcactgtggcag
gcgctgcacgacggcctagccgacggttcgctgaaggggcgtgccggcgcggcattgcag
gccttcgccgatctcgtcgaacggctcgacaacgacaccgcgggtatggcactgcacgaa
atcatcgctcatgtgaacgagatatcggggctcgtcgagcatcaccagaacgagaaaggt
gaaaaaggccaagcccgggtcgagaacctggaggaactgatcaacgccgcccgcgccttc
acccagggcgagtccttcgacccgcccgaggccggcgaggggggcgtggcgctggaggct
ttcctggccgaggcggcgctcaacgccggcgatcacgaagccgacgagttcgaggacagc
gtgcagctgatgacgctgcattcggcgaaagggctggaattcccggtggtattcatcgcc
ggggtcgaggaggggttgttcccgcacaagatgtcgctggaggagcccggtcgcctcgag
gaggagcgccgcctgtgctacgtcggcctgacgcgggccatgcgcaagctctacctgacc
cactcggagatacgtcgcctgcacggcaaggaaacctttcagcggccatcgcgtttcttg
cgtgaaatacctgccgagtacctggaagaggtgcgcctgcgtggccagatttcgcgaccg
gtgacggccacccgtccggcggtgggactgtctcggcaaacatcggtcgaccctggcggt
gacttgcccagcctgagtctgggccaacgggtgcagcaccctgttttcggtgaaggcgtc
atcctcaatgccgaaggcgagggtgcgcgagcccgggtacaggtcagcttcgagggcgaa
ggcgataaatggttggtgcttggcttcgccaagctaactccgttatga
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