Homarus americanus (American lobster): 121853887
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Entry
121853887 CDS
T07477
Name
(RefSeq) probable ligand-gated ion channel 46
KO
K05181
gamma-aminobutyric acid receptor subunit beta
Organism
hame
Homarus americanus (American lobster)
Pathway
hame04080
Neuroactive ligand-receptor interaction
hame04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
hame00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
121853887
04082 Neuroactive ligand signaling
121853887
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
hame04040
]
121853887
Ion channels [BR:
hame04040
]
Ligand-gated channels
GABA-A
121853887
BRITE hierarchy
SSDB
Ortholog
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GFIT
Motif
Pfam:
Neur_chan_LBD
Neur_chan_memb
Ldl_recept_a
Lectin_C
DUF6585
Motif
Other DBs
NCBI-GeneID:
121853887
NCBI-ProteinID:
XP_042204201
LinkDB
All DBs
Position
Unknown
AA seq
599 aa
AA seq
DB search
MAVPSSPDDNNHLHKELQPFYETCQPGSLYKFYIGIADEAEEGVWVNINSQKQIVYDNFR
ASHPRGGRIHNCGHIFPGGDWSDTSCATELCGTCHVDRSEFLYLRGLCFPTEQKMYFRLG
GYIEGRPLFRGYFDLIILWEDISLRWLLKSIENNVTMAWFSPHERHHYPIGRHTWTTGDL
VCGFHSGTDIALSLSSCPHDMFTCKSGFCLDQRYRCNFRYECLDGSDEDDCGVVVIDSSY
RRHLPPRGPQDTTLLLTPTLTLTRIAGIDDISMAVDLEFIVSPTWRDDRLSFNHLHPNTN
TLILEEEVKQIWTPKYQLVNLEGGQYELLDETMVVTTSNLPSLPDFNAAKRDFVYPGASN
NLSIIHQYTARFTCAFDLYVYPFDVQVCSIDLRLPWTYNDIVEFSRTGGVGSYTGQRDLS
LYTVKNVRLNSESGPDQLSLKFELHRRGGLVLLSTFVPSVLLLLVSWATLFVKQEALNVR
AIMSLTTLLVLYTLFSNLSSSMPNTAAIKLIDIWFFLIILLLFFNIMVHIFVEFLVHRCS
QSTEGAPETIKVSPFGRVFVQRETSTARVERIVSTYRTYIFPPTFLISTVTLGVMMFLI
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggccgtcccctcctcacccgacgacaataaccacctacacaaagagcttcagcctttc
tacgaaacctgccagccgggaagcctgtacaagttttatattggcattgccgatgaagct
gaggagggagtgtgggtaaatattaatagccagaaacagatagtgtatgataactttagg
gcctctcatccccgcggcgggaggatccataactgcggtcacatctttcctggcggtgat
tggagcgacacttcctgtgccactgagctttgtggcacttgtcatgtcgatcgatcagag
ttcctatacctccgtggattatgctttcccacggaacaaaagatgtacttccgtctaggt
ggatatatagagggccgacctttgtttcgtggatattttgatctcatcattttgtgggag
gacatctctctgcgctggttactgaagagtattgaaaacaatgtaacaatggcatggttt
tcacctcatgagcgtcatcattacccgatcggtcgacacacctggacaacgggtgacctg
gtgtgtggtttccattcaggaactgacatcgctctcagcctgtcttcctgcccacacgac
atgtttacctgtaaatccggcttctgtctcgaccaacgttaccgctgtaacttccgctat
gagtgtctcgacgggagtgacgaagatgactgtggcgtagttgtgatagatagcagctat
cgtcgtcacctgccacctcgaggtccacaggacacgaccctcttactcacgccaaccctc
acgctcactcgcatcgccggaattgatgacatcagcatggcggtggacctggagttcata
gtgagcccaacgtggagagacgaccgacttagttttaaccatctacaccccaatacaaac
acattgatcctagaggaagaagttaaacagatatggacgcctaagtaccaattggtaaac
ctggaaggtggacaatacgaactgctggatgaaacgatggtcgtcactacttcaaacttg
cccagcttacctgacttcaacgctgccaaaagagacttcgtttatccaggggcatccaac
aatctctcaatcatccaccagtacacggcgagattcacttgtgcatttgatctttacgtg
taccccttcgacgtgcaggtgtgtagcattgacctccgccttccatggacctacaacgat
attgttgaattctcaaggacaggaggtgttgggtcttacacaggacagagagacttgtcc
ctctatactgtaaaaaatgtcaggttgaattcggagtctggacctgaccaactgagctta
aagtttgagctgcaccgtcgcgggggtctggttcttctgtccaccttcgtgccgtcggtg
ctgctgctgctggtgagctgggcgacgctcttcgtcaagcaagaggctctcaatgtccga
gccataatgtcactcaccacactgttagtgctgtacacactcttctctaacctctccagc
tccatgcctaacactgccgccattaagctcatcgatatctggttcttcttaatcatctta
ctcctcttctttaacatcatggtacacatattcgtggagttccttgtacatcggtgttct
cagagtactgaaggagctccggagacaataaaagtttctcctttcgggagggtgtttgta
caacgggagacttccacagccagagttgagagaatcgtatctacctacaggacatacata
tttcctcctacttttcttatatctactgttactttgggagtgatgatgttccttatataa
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