Homarus americanus (American lobster): 121854393
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Entry
121854393 CDS
T07477
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
hame
Homarus americanus (American lobster)
Pathway
hame03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hame00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121854393
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hame03021
]
121854393
03019 Messenger RNA biogenesis [BR:
hame03019
]
121854393
Transcription machinery [BR:
hame03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121854393
Messenger RNA biogenesis [BR:
hame03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
121854393
U7-dependent histone pre-mRNA processing factors
121854393
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_3
Lactamase_B_2
Beta_lactamase3
DUF6047
Motif
Other DBs
NCBI-GeneID:
121854393
NCBI-ProteinID:
XP_042204988
LinkDB
All DBs
Position
Unknown
AA seq
696 aa
AA seq
DB search
MTTNRPRVQVLYLPDEESDELKITPLGSGQEVGRSCHFLEFKGKKVLLDFGIHPALTGMS
ALPFVDHIDPEQIDLMLVSHFHLDHAGGLPWFLMRTRFKGRCFMTHPTKAIYKWLLSDYI
KVSNIATEHMLYSESDLEASLNKINVINFHEEKEVHGIKFWCYHAGHVLGAAMFMIQIAG
VKILYTGDFSRQEDRHLMMAEIPQIRPDVLMIESTYGVSIHEPRESRESRFTTTVHTIVG
RGGRCLIPVFALGRAQELLLILDEYWQLHPELHEVPIYYASALAKKCMSVYQTYTHAMNE
RIQRQISISNPFQFKHISNLKGMDQFEDIGPCVIMASPGMMQSGLSRELFEMWCPDPKNG
VIIAGYCVEGTLAKEILKEPEEVTTMSGQRLPMKCSVEYISFSAHTDFEQTSHFIRTIRP
PNVVLVHGEMTEMSRLKAALEREYEGSTENPVKVFNPKNLETVTFHFRGEKMAKVMGELA
VNKPKENGVVSGILVKRNFNCHIISPKELGKYSELSVSTISQRTSIHYTGSWQLLHYLLA
SMYGSIEAIASDSSENTSLRVFDAVTIVQEPPVVVLEWVASPTSDMYADAVMKVILKAQE
LDSSSISVPSVTSAVFDKMHFKECLIELFQEMFGEDSVPKIFKGEKLYVDVNNIKANIDL
SSLRVTCESEKLQRIVQTAVTKLFESLAPVTVGVKK
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgacaacaaatcgaccaagggttcaagttctgtatcttccagatgaagagagtgacgag
ctgaaaattactccgttggggtctggtcaagaggttggacgatcatgtcacttcttagaa
ttcaaaggcaaaaaagtcttgctggactttggcatccatcctgcactgactggaatgagt
gctctgccctttgttgaccatattgatcctgaacaaatagacttgatgcttgtgtcgcac
ttccatctggaccatgctggtggcttgccgtggtttttgatgcgaacacgcttcaaagga
cgttgcttcatgactcatccaactaaagcaatttacaagtggcttctctctgattacatt
aaagttagtaacattgccactgagcacatgctgtactcagagagtgaccttgaagcttcc
cttaacaaaattaatgtgattaacttccatgaagagaaggaggtacatggcatcaagttt
tggtgctatcacgcaggacatgttctcggtgctgcaatgtttatgattcagattgctggt
gtaaagatcctctatactggtgacttttcaaggcaagaggaccgtcaccttatgatggca
gaaataccacagattcgaccagatgttttgatgattgagtcaacatatggagtcagcatt
catgaaccccgtgagagtagagaatcacgcttcactacaacagttcatacaattgtaggc
cgaggaggccgctgtctaatacctgtatttgctcttggccgagcacaggaacttctattg
attttggatgaatattggcaactacaccctgagttacatgaggtacccatctattatgcc
tcagctcttgccaagaagtgcatgagtgtctatcaaacttatacacatgctatgaatgaa
aggattcagcgacagatatctatcagtaatccttttcagttcaagcatatttcaaaccta
aaggggatggaccagtttgaggatattgggccatgtgtcattatggcttcaccaggtatg
atgcagagtggactttctcgggaattatttgaaatgtggtgtcctgatcctaaaaatgga
gtcataattgcaggttactgtgtggaaggtacattggccaaagaaatattaaaggagcca
gaggaagtgactactatgtcaggtcagagattaccaatgaagtgttctgttgaatacatc
tccttctctgcccacactgactttgagcagacttcacacttcatccgtactattcgacct
ccaaatgtggttttggtgcatggagaaatgacagaaatgtcacgtttgaaggcagccctt
gagagagaatacgaaggtagcacagaaaatcctgtaaaagtgttcaacccgaagaatctt
gagactgtcacatttcacttcaggggggagaaaatggctaaggtaatgggagaacttgct
gttaataaacccaaagagaatggcgtagtttctggtattttggttaaacggaacttcaac
tgtcatatcatttctcccaaagaattaggcaagtacagtgaactctcggtgtctaccatt
agtcagagaaccagcatccactacactggatcttggcagctgcttcactacctcttagcc
tccatgtatggcagcattgaggctattgcttctgacagttctgagaacacaagtctccga
gtatttgatgctgttactattgttcaggagccaccagttgtggtactagaatgggttgcc
agtccaacaagtgacatgtatgctgatgctgtaatgaaggtgattcttaaggcacaagag
ctagatagcagttccatctctgtgccatcagtcacaagtgcagtgtttgacaagatgcac
ttcaaggagtgtttaatagagttattccaagaaatgtttggggaagactctgtgcccaag
atatttaaaggtgaaaagctctacgtggatgtcaacaacattaaggcgaatattgatctt
tcctctttgagagtaacgtgtgaaagtgaaaaactacagagaattgttcaaacagctgta
acaaaactgtttgaatccttagcacccgttacagttggtgtaaaaaaataa
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