Homarus americanus (American lobster): 121855970
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Entry
121855970 CDS
T07477
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
hame
Homarus americanus (American lobster)
Pathway
hame03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hame00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121855970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hame03041
]
121855970
Enzymes [BR:
hame01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121855970
Spliceosome [BR:
hame03041
]
Complex C
Other components
Step II factors
121855970
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_19
AAA_22
nSTAND3
Flavi_DEAD
T2SSE
IMUP
ATPase
AAA_7
MFMR_assoc
ABC_tran
Sigma54_activat
AAA_25
ResIII
Motif
Other DBs
NCBI-GeneID:
121855970
NCBI-ProteinID:
XP_042207124
LinkDB
All DBs
Position
Unknown
AA seq
1264 aa
AA seq
DB search
MQRRYVYGIRSYLVKVNMSHILEGTSGGIGGLIIRKTKKEDDNFTFKKPAIPIRGSIFGL
DKLAALKRKIHEDDHLNKSEVKSKKYSSSSSSSSSSSSSDSDDDADDDDDGKKEGQDKYS
DKGKGREYRSRYDETPTYTGGVNREIKDKMIEKQKKIRGKFVSASTKEKKNEREREPRGD
RDRSRENERDKRDKYRHRDKYRDRYNNDKSERRNYNDRSERYNYSERSERLGDYSERSER
DWSERSSRTPRFSEAPETPKIPGVKDTPSHSAWDDDDGTPHKMSSWDLPTPSSSHRHSRD
SDWSIRSSNRSFRERSQSRVPRQQSDKTPLPTPSYKYNVWMTEREGKMEREFENEEEREK
WEEEEKRLDRQWYDMDQGYDDTNNPFSDVSAEYERKKTEKIEKSKRKMSAKQRQIHKDNE
LWETNRMLTSGVVQKIDYDEDFEEEFTNRVHILVHNIVPPFLDGRIVFTKQPEPVIPVKD
STSDMAIVSRKGSAVVKARREQRERRKAAKKEWELAGTQLGNLIGVKKEDETDDRKIEEG
ETDYKADQKFAEHMKAASEASSNFAREKTIKEQRQYLPVFAVREKLLRIIRENSVVIIVG
ETGSGKTTQLTQYLHEGGYSKLGMIGCTQPRRVAAMSVAKRVSDEMDTHLGEEVGYAIRF
EDCTSENTIIKYMTDGILLRESLRESDLDNYSAIIMDEAHERSLSTDVLFGLLREVVARR
QDLKLIVTSATMDAEKFATFFGEVPVFTIPGRTFPVELLYSRNGVEDYVEAAVKQALQIH
LQAEEGDILVFMPGQEDIEVTCELIVEKLDEIDNAPQLAVLPIYSQLPSDLQAKIFQRAP
DGLRKCVVATNIAETSLTVDGIKYVVDSGYCKLKVFNPRVGMDGLQVYPVSQANANQRLG
RAGRTGPGMCYRLYTERQYKDELLPTTVPEIQRTNLANVVLLLKSLGVEDLLKFYFMDPP
PQDNLLNSQYQLWTLGALDNTGVLTKLGRAMVEFPLDPALSKMLLAGVDMQCSEEILTIV
SMLSVPALFYRPKGREEEADAMREKFQVPESDHLTYLNIYRQWRLQKYSMNWCNKHFLHF
KALKKVREVRQQLHDIMDQQKLELVSCGMDEDLVRKCICAAYFHQACRLKGIGEYVNLRT
GTPCHLHPTSALFGMGYTPDYIVYHELVMTSKEYMQCVTAVEGGWLAEVGDKFYSVNEGG
ASRMEKRRQALAHKAAMEAEMDRAQDTLKARAEERQRRQESSRRQQVYDIGTPRRVQTSA
RFGI
NT seq
3795 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggcggtatgtgtacggtatccgttcctatctcgtaaaggtgaatatgtcccac
attttggaaggtacaagtggaggcataggtggtctgatcattcggaaaaccaagaaagag
gatgacaattttacctttaaaaagcctgctatacccataagaggatccatctttgggttg
gacaaacttgcagctctcaaaaggaaaatacacgaagatgaccatttgaacaagagtgaa
gtaaaaagtaaaaagtattcttcttcttcttcttcttcctcttcttcttcttcaagtgat
tcagatgatgatgctgatgatgatgatgatggcaagaaagagggacaagataagtacagt
gacaagggaaaagggagggagtaccgctccaggtacgatgagacgcctacttatacaggt
ggtgtaaatagggaaataaaagataaaatgattgaaaaacaaaagaaaataagaggtaag
tttgttagtgcatcaacgaaggaaaaaaaaaatgaaagagagagggaacctaggggggat
agggacagaagtagagaaaatgagagagacaaaagagataagtacaggcatagagacaaa
taccgagatagatataacaatgataaaagtgagagaagaaattacaatgatagaagtgag
agatataactacagtgaaagaagtgagaggttgggtgattacagtgaacgatcagaaagg
gactggtcagagagatccagcagaacacccagattttctgaagctccagaaacaccgaag
attcccggggtgaaagacacaccttcacattctgcctgggacgacgatgacggcacgcca
cacaaaatgtcgtcgtgggatctgcccacgccctcatcctcccaccgccattcccgagac
agcgattggtcgattcgtagtagcaaccggtccttcagagagagatctcagagtagagta
cctcgtcaacaaagtgacaagactccattgccaacaccttcatacaagtataatgtatgg
atgacagaaagagaaggtaagatggaaagagaatttgaaaatgaagaagaaagggagaag
tgggaggaggaagaaaagagattggatagacagtggtatgacatggaccagggctatgat
gataccaacaacccattctctgatgtgtctgctgagtatgaaagaaagaaaactgagaag
attgaaaaaagtaaaagaaagatgagtgcaaaacaaagacagattcataaagacaatgaa
ttatgggaaactaatagaatgttaacaagtggcgttgtacaaaaaattgattatgacgaa
gattttgaagaggagtttaccaatcgtgtgcacattttggtacacaacatcgttccccca
ttcctcgatggacgtattgtgtttacaaagcaaccagaaccagtgattccagtgaaagac
tccacctcagatatggcaattgtgtccagaaagggttcggcagttgtcaaagctcgacgt
gagcagcgggagcgtagaaaagctgccaaaaaagaatgggaacttgctggtacacaactt
ggtaatcttataggtgtgaaaaaggaggacgagacagatgataggaagattgaagagggt
gaaactgactataaagcagatcagaagtttgccgaacacatgaaggcagcaagtgaagct
agtagcaactttgccagagagaaaacaattaaagaacaacgtcagtaccttccagttttt
gcagtgagagagaagctcctccgtataattcgagaaaattcagtggtgattattgtgggt
gaaacaggaagtggtaagacgacgcaactaacacagtaccttcacgagggaggatacagc
aaactaggtatgattgggtgtacacaaccacgtcgagtcgcagctatgtccgttgccaag
cgtgtttctgatgaaatggatactcatcttggtgaagaagtgggctatgctatacgattt
gaggactgtacaagtgaaaataccataattaaatatatgactgacggtatactgcttcgt
gaatctttacgcgagagcgatttagataactacagtgcaatcataatggacgaggctcac
gaacgttccctcagcacagatgtgctctttggtttactccgtgaagttgtggctcgtaga
caggatctaaaactcatagtaacatctgctacaatggatgccgagaaatttgccactttc
tttggtgaagtaccagtatttacaatcccgggacgaacgttccccgtggaattactctat
tcccgcaatggggtggaggactacgtagaggctgcagtaaaacaggcattacagatacat
cttcaggctgaggagggtgatattttagtctttatgcctggtcaggaagatattgaggta
acatgtgaactgattgtggaaaagttggatgagattgataatgcacctcagttggctgtg
cttcccatatactcacaactcccttctgatcttcaagccaagatttttcaacgtgctcca
gatggccttcgtaaatgtgtcgtagctaccaatattgccgaaacctccctcactgtggat
ggtataaagtatgtggtagattctggatactgtaaattaaaggtgttcaatcctcgagtt
ggtatggatggccttcaagtttacccagtctcacaggctaatgccaaccagcgtcttgga
agagccggccgcactggtcctggcatgtgttatcgtctctacacagaaaggcagtacaaa
gatgagttattacctacaacagtcccagaaattcagcgcaccaatctagccaatgtagtt
ctccttcttaagtcgttgggggtcgaagatcttcttaaattttatttcatggatcctcct
ccccaagataacttactcaactcacagtatcaattatggacccttggagccttggacaac
acaggagttttgacaaaattagggcgtgcaatggttgaattccctttggatcctgcactt
tcaaagatgttgctggctggtgttgatatgcaatgttctgaagaaatcttgaccatagta
tccatgttatcagtaccagcattgttctaccggcctaagggtcgtgaagaggaagctgat
gctatgcgagaaaaatttcaagtgccagaatcagatcatctgacatatctcaacatctat
cgtcagtggcgtcttcagaaatattcaatgaactggtgcaataaacattttttgcacttt
aaagcacttaagaaagttagggaggtgaggcagcagctgcatgatattatggaccaacaa
aagcttgaattagtcagctgtggtatggatgaagatttggtgcgtaagtgcatttgtgct
gcatacttccaccaagcgtgtcgtctcaaaggtattggtgaatatgtgaatttaaggaca
gggacaccgtgccatctacatccaacctcagccctgtttggtatgggttacactcctgat
tacattgtttaccatgaattggttatgacaagcaaagaatacatgcagtgtgtgactgct
gtagaaggaggttggctggctgaagttggagataagttttatagtgtcaatgaaggaggt
gcatctcgaatggagaaacgacgtcaggctttggcacataaagctgccatggaggcagaa
atggaccgggcccaggacaccttaaaggcacgagctgaagaaagacaacgtagacaagag
tcatcacgtcgtcagcaagtgtatgacattggtacacccaggcgtgtgcaaacatctgcc
cgctttggaatctga
DBGET
integrated database retrieval system
