Homarus americanus (American lobster): 121856938
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Entry
121856938 CDS
T07477
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
hame
Homarus americanus (American lobster)
Pathway
hame03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hame00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121856938
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hame03019
]
121856938
03041 Spliceosome [BR:
hame03041
]
121856938
03009 Ribosome biogenesis [BR:
hame03009
]
121856938
03016 Transfer RNA biogenesis [BR:
hame03016
]
121856938
Enzymes [BR:
hame01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121856938
Messenger RNA biogenesis [BR:
hame03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
121856938
Spliceosome [BR:
hame03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
121856938
Complex C
U4/U6.U5 tri-SnRNP related factors
121856938
Ribosome biogenesis [BR:
hame03009
]
Eukaryotic type
Pre-60S particles
Helicases
121856938
Transfer RNA biogenesis [BR:
hame03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
121856938
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
Exo70_N
DUF6987
nSTAND3
Motif
Other DBs
NCBI-GeneID:
121856938
NCBI-ProteinID:
XP_042208658
LinkDB
All DBs
Position
Unknown
AA seq
1020 aa
AA seq
DB search
MACFGDDLFDFLEDDEKKVEDLPDIQEVDEGEDERAAVQLNQLLGKRAAKEDTKKIKGTV
KKRRSQVEATQSELRLIEDLPRIAVHVIETVEACTHEVAVPPGEMYIPLKPPKDKPARTY
PFILDPFQKEAILCIDNNQSVLVSAHTSAGKTVVAEYSIAMCLQNKQRVIYTTPIKALSN
QKYRDFSDEFTDVGLLTGDVTINPNASCLIMTTEILRSMLYRGCEVTREVGWVIFDEIHY
MRDKERGYVWEETIILLPPTVHFVFLSATIPNASQFAQWVCYLHHQPCHVVYTDYRPTPL
QHYIFPAGGEGIYLAVDETGKFREDNFNTAMTILQSAPKQASSRGRKGGVKDTSDCFKLV
KMIMERNFAPVIIFSFSKKECEAYALMMSKLDFNLAEEKQLVDEVFNNAIAVLSEEDRQL
PQVVSVLPLLRRGIGIHHGGLLPIIKETIEILFGEGLVKALFATETFAMGLNMPARTVLF
TSVRKFDGHDFRWLTSGEYIQMSGRAGRRGKDDKGIVIMMVDEKLNTSVVKNLVQGKADP
INSAFHLTYNMVLNLLRVEQINPEYILERSFFQFQNYSSIPSLCERVSTSEKELEKIVVP
REFEVESYYKIKQTIHNLKNERHVFITRPIYITPFLQPGRLVYVKNNEDDFGWGVVLSFK
KQEEQNSLEGPTITVDVILRVSEATAALKVASDLKPPKPGEKSEPVVMSVMLKLIQEVSA
VRLKLPSDLKPLDQRVMVIKMVQEALKRVPENHFQLDPVKNMKIKDETFLEIVNKLDKFK
VRLESHKLHKDPERDQLYEKFSKKMELKKELSNAEVDLKRAKSLLQMDELKCRKRVLRRL
GYATSQDVIERKGRVACELSAADELLITEMLFNGLFNDLSSAQTCALLSTFVCDEKGTEM
PKLGEELSGPLRQMQDIARRIARVSHECKLEIDEENYVEQFKPYLMDVVYEWCNGASFME
LCRKTEIFEGSIIRAMRRLEELLRQMIQAAKAIGIDLENKFSEGVKLLKRDIVFAASLYL
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atggcgtgctttggtgatgatctttttgattttttagaagatgacgagaaaaaggttgaa
gatttgccagacattcaagaagttgatgagggtgaagatgaaagagcagcagtacaactc
aaccagttactggggaagcgagctgcaaaggaggacaccaagaagataaagggaacagta
aagaagcgtcgatcacaagtagaggcaacacagtcagagctgaggctgatagaagatctg
ccaagaatagcagtacatgtgatagaaactgtagaggcatgtacacatgaggtggctgtg
ccccctggggaaatgtacattccactgaaacctccaaaagataaaccagcaagaacttat
ccatttatattggacccttttcagaaagaagccatattgtgtattgataacaatcaatcg
gttttagtttctgctcacacatcagctggtaaaacagttgttgctgaatattcaatagcc
atgtgtttacaaaacaagcagagagtcatttacacaacacccatcaaagccttgagtaat
cagaaatacagagattttagtgacgagttcactgatgtaggtctgttaactggtgatgtg
actatcaacccaaacgcttcttgtctcattatgactacagaaattttacgttcaatgttg
tatcgaggctgtgaagtgaccagagaagttggttgggttatttttgatgagattcactac
atgagagacaaggaaagaggttatgtgtgggaggaaactatcatcctactgccgcctaca
gtccactttgtctttctttctgcaaccatcccaaatgcaagtcagtttgctcagtgggtg
tgttaccttcaccatcagccttgtcatgtggtctacacagattaccgaccaactcctttg
caacattacatctttccagcaggaggtgaagggatctaccttgctgttgatgaaactggc
aagttcagagaagataattttaatacagcaatgacaatattgcagagtgcaccaaaacag
gcaagttcaagaggcaggaaaggaggagtcaaggatacttcagactgctttaagcttgtg
aagatgatcatggagcgtaattttgcaccagtcatcatatttagcttttcgaaaaaggag
tgcgaagcatatgctctgatgatgtccaagttagacttcaatttagcagaggaaaagcaa
ttggtggatgaagtgttcaacaatgcaatcgcagtcctttcagaagaagacaggcagtta
ccccaagtggtgtcagttcttcccttattacgacgaggaattggcatccatcacggaggt
ttgctgcctataatcaaggagacaatagagattctctttggtgagggtttggtgaaggct
ctctttgccacagagacttttgctatgggtctcaacatgcctgccagaacagtccttttc
acgagtgtccgcaaatttgatggacatgacttccgttggttgacttctggtgaatacatc
cagatgtccggtcgtgcaggccgtcgagggaaggacgacaagggtattgttataatgatg
gtggatgagaagcttaacacatcagtcgtgaagaacttggtgcagggtaaagctgatccc
atcaactctgcatttcacctgacgtacaacatggtactaaacttactgagggtggagcag
atcaaccctgagtacatcttagagaggtccttcttccagtttcagaattattcatccatc
ccatcactttgtgaacgtgtgagcaccagcgaaaaagagttggagaagatcgttgtcccc
cgagagtttgaggtggagagttactacaaaatcaaacaaaccattcacaacctcaagaat
gagcggcatgtttttatcacacgaccaatatacatcacgcctttcctccaaccagggaga
cttgtttatgttaagaataatgaggatgactttggctggggtgttgtgctcagctttaag
aaacaggaagagcagaactcactagagggcccaaccataactgtagatgttattttacgt
gtgtcagaggcaacagctgctttaaaggtggcatcagatttaaaacctccaaaaccagga
gagaagagtgagccagtagtgatgtcagtgatgttgaagttaatccaggaggtgtctgct
gtcagactaaagctacctagtgacctcaagccccttgaccagcgggttatggtcatcaag
atggttcaggaagccctgaagagagtgccagagaatcattttcaactggacccagtgaaa
aacatgaaaataaaggatgagacatttttggagattgtcaacaagctagataagtttaaa
gttcgtcttgagtcacacaaactacacaaagaccccgaacgagatcaattgtatgaaaaa
ttttccaagaagatggagctgaagaaggaactcagcaatgctgaagtagatctgaagagg
gctaagagtttattgcaaatggatgaattaaaatgcaggaagcgcgtcctccgtcgcctt
ggatatgccacttcccaagatgtaattgaacgtaaaggtcgagtagcttgtgaactatca
gcagcagatgaacttctcattactgagatgctcttcaatggtcttttcaacgatttatct
tctgcacagacatgtgctctgctcagcacatttgtttgtgatgaaaagggcacagaaatg
cccaaacttggtgaagagctttcggggccattaagacaaatgcaagacatagctcgccga
attgctcgtgtcagtcatgagtgtaaattagagattgatgaagaaaattatgtagaacag
ttcaagccctacctgatggatgttgtgtatgagtggtgtaatggtgcctcatttatggag
ctgtgtagaaaaactgaaatttttgaaggaagtattattcgtgccatgcgtcgtttggag
gaactcctgcgtcagatgatccaggctgccaaggccattggcattgacttggaaaataaa
ttttctgaaggcgtcaaattactgaagagagatattgtatttgcagcaagtctttacttg
tag
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integrated database retrieval system
