Homarus americanus (American lobster): 121857079
Help
Entry
121857079 CDS
T07477
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
hame
Homarus americanus (American lobster)
Pathway
hame03013
Nucleocytoplasmic transport
hame03015
mRNA surveillance pathway
hame03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hame00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121857079
09122 Translation
03013 Nucleocytoplasmic transport
121857079
03015 mRNA surveillance pathway
121857079
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hame03019
]
121857079
03041 Spliceosome [BR:
hame03041
]
121857079
Enzymes [BR:
hame01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121857079
Messenger RNA biogenesis [BR:
hame03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121857079
Spliceosome [BR:
hame03041
]
Complex C
Other components
EJC/TREX
121857079
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
121857079
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Utp25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
121857079
NCBI-ProteinID:
XP_042208865
LinkDB
All DBs
Position
Unknown
AA seq
427 aa
AA seq
DB search
MTDHETELLDYEEDEDAVEAGVGESNEAAPAKKDVKGTYVSIHSSGFRDFLLKPEILRSI
VDCGFEHPSEVQHECIPQAVLGMDILGQAKSGMGKTAVFVLATLQQIDPVDGQVSVLVMC
HTRELAYQIAKEYERFSKYMPTVKVGVFFGGLNIQKDEETLKNNCPHIVVGTPGRVLALV
RNKKLNLRHLKHFVLDECDKMLEQLDMRRDVQEIFRNTPHEKQVMMFSATLSKDIRPVCK
KFMQDPMEVYVDDEAKLTLHGLQQHYVKIKENEKNRKLFELLDALEFNQVVIFVKSVQRC
MALAQLLVEQNFPAIAIHRAMQQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVF
NYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSEESDAKTLNEVQERFDVNITELPDEIDL
SSYIEGR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccatgagactgagcttttggactacgaggaggatgaagatgcggtggaggca
ggagtgggagagtccaatgaggctgccccagcaaaaaaagatgtcaagggtacatatgta
tccattcattcatcaggtttcagagatttcctcctcaaaccagaaatcttgcggtccatt
gttgactgtggttttgaacatccctcagaagtgcaacatgaatgtattccccaagcagtg
ctgggtatggacatcctagggcaggctaagtctggtatgggcaaaacagcagtgtttgtg
ttagcgaccctgcagcagatagatccagttgatggccaggtgtctgtgctggtgatgtgt
cacacccgagaattagcataccaaatagcaaaggaatatgaacggttcagcaagtatatg
cccactgtcaaggttggtgtgttctttggaggcttgaatattcagaaggatgaggaaaca
ctgaagaacaattgccctcacattgttgtaggtacacccggtcgtgtccttgctttggtc
cgaaacaagaagcttaatttgcgacatctcaagcactttgtcttggatgagtgtgataag
atgcttgaacaactagacatgcgtcgtgatgtccaagaaatcttccgcaacacaccccat
gagaagcaagtgatgatgttcagcgctacattgagcaaggatattcgtccagtatgcaag
aagttcatgcaagatcccatggaagtttatgttgatgatgaagccaagctaacccttcat
ggcctccagcagcattatgtcaagattaaggagaatgaaaaaaacagaaaattatttgaa
ttacttgatgccctagaatttaaccaggttgttatatttgtgaagtctgtgcagcggtgc
atggccttagcacagctgctggtggagcagaatttcccagccattgctattcatcgtgct
atgcagcaggaagagaggctcagtcgctaccagcagttcaaagactttcaaaagcgtatc
cttgttgccacaaacctgtttggccgtggcatggacattgagagagttaacatcgtcttc
aattatgacatgcctgaggacagtgatacgtaccttcatcgggtagcaagagctggaaga
tttggaaccaagggtttggctgtaacatttgtcagtgaagaaagtgatgccaagactctg
aatgaagtccaagagcgatttgatgtcaatatcacggaactgccagatgaaattgatctc
tcttcatatattgagggccgctaa
DBGET
integrated database retrieval system
