Homarus americanus (American lobster): 121857499
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Entry
121857499 CDS
T07477
Name
(RefSeq) LOW QUALITY PROTEIN: splicing factor 3B subunit 3-like
KO
K12830
splicing factor 3B subunit 3
Organism
hame
Homarus americanus (American lobster)
Pathway
hame03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hame00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121857499
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hame03021
]
121857499
03041 Spliceosome [BR:
hame03041
]
121857499
03036 Chromosome and associated proteins [BR:
hame03036
]
121857499
Transcription machinery [BR:
hame03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
121857499
Spliceosome [BR:
hame03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
121857499
Complex B
121857499
Complex C
U2 SnRNP specific factors
121857499
Chromosome and associated proteins [BR:
hame03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
121857499
TFTC complex
121857499
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
121857499
NCBI-ProteinID:
XP_042209519
LinkDB
All DBs
Position
Unknown
AA seq
1216 aa
AA seq
DB search
MYLYNLTLQRASGITHAVHGNFSGTRTQELVVSRGRSLELLRPDPNTGKVHTILTTDIFG
VIRSLMAFRLTGGNKDYVVVGSDSGRITILEYNQAKNQFERIHMETFGKSGCRRIVPGQY
LAIDPKGRAVMIGAVEKQKLVYILNRDAAARLTISSPLEAHKSNTLVYHTVGVDVGFENP
LFACLEIDYEEADTDPTGEAVHRTQQTLTFYELDLGLNHVVRKYHEPLEEHANFLISVPG
GNDGPSGVLVCSENYITYKNLGDQPDIRCPIPRRRNDLDDPERGMIFICAATHKTRSMFF
FLAQTEQGDIFKITLETDEDVVTEIKLKYFDTVPPATAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDDEPEFSSAMPLEEGDTFFYAPRQLQNLVLVDELDSLSPIMACQIADLANEDT
PQLYTVCGRGPRSSLRVLRHGLEVSEMAVSELPGNPTAVWTVRKRGEDQYDSYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLACSQLGDDALVQVYPDGIRHIRADRRVNEWKAPG
KKTIVRCALNQRQVVIALTGGEIVYFEMDPTGQLNEYTERKEMKSDVICMGVGRVPSGEQ
RSRFLAVGLSDNTVRIISLDPNDCLTVRGMQALPALPESLSVIEMGGQEGSENEPRTLGS
LYLNIGLQNGVLLRTVLDSVTGDMSDTRTRYLGSRPVKLFRIIMQGNESVLAMSSRSWLS
YYYQNRFHLTPLSYESLEYAAGFSSEQCPEGIVAISTNTLRILALEKLGAVFNQVSHPLE
YTPRKFVIHPESGHLVVIETDHNAYTDDTKRQRKMQMAEELREAAGEEETEVADRMAEAL
LSEDLPDSVFGAPKAGPGMWASLVRIIEPIQGNTLHTIRLDQNEAAFSISLVKFANQTDM
DQQHLLVGTVKDYQLSPRIVDCGYIYCYRVVGDCTSLELVHRTEVEDIPTAICSYNGRVL
IGVGRLLRIYDLGKKKLLRKCENKHIPNLIVDIKARGQRVFVSDVQESLFVLRYKRQENQ
LIIFVDDTNQRWVTTSCLLDFDTAAVADKFGNIAVVRLGGDINDDVDEDPTGNKALWDRG
LLNGASQKAEVIANFHVGETVNTLEKATPIPRGSESLVYTTSADVSSVGAATSRRLLNCF
QNLEMHMRSEHPPLCGRDHLSFRSYFFPVKNVIDGDICEQLNMVDQAKQRSISEDLDKTP
NELSKRLEDIRTRYAF
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgtacctctataacctcacattgcagagagcgtccgggatcacccacgcggtccacggg
aacttctcgggcaccaggactcaggagttggtcgtgtcgaggggccggtcgctcgaacta
ctcaggcccgaccctaatactggaaaagtccacaccatactgacgacagacatctttggg
gtcatccggtccctaatggctttcaggttaacgggcggaaataaagattacgtcgtcgtt
gggtcggactccggacggatcaccatccttgagtacaaccaggcaaaaaatcagttcgaa
cgcatccacatggaaacattcggcaagagcggatgccggcgaatcgtccccggccaatac
ctagccatcgatcctaagggacgtgccgtgatgattggtgccgtagagaagcagaagttg
gtgtacatcctgaaccgcgacgcagctgctcgcctcaccatttcctctcctctcgaagcc
cacaagagcaacaccctcgtctaccacacagttggcgtcgacgtgggtttcgagaatccg
ctgttcgcctgtttggagattgattacgaggaagccgacacggaccccacaggagaggcg
gttcacaggacgcagcagacgttaaccttctacgagttggacctcgggctgaaccacgtc
gttaggaagtaccacgaaccccttgaggagcacgcgaactttcttatctccgtccctggc
gggaacgacgggccatcaggcgtgttggtctgctccgagaactacatcacctacaagaac
ttgggggatcagccagatatccgctgtccgatacccaggaggaggaatgacctcgatgac
ccggaacgaggcatgatcttcatctgcgctgcgacccacaaaactcgatccatgtttttc
ttcttggcacagacggaacagggggacatcttcaagatcaccttggagaccgacgaggac
gtggtgacggagatcaaactgaaatacttcgacaccgtcccaccagcgaccgccatgtgc
gtcctcaagaccgggttcctgtttgtggcatcggagttcgggaatcattatctctaccag
atcgcccatctcggtgacgacgacgacgaaccagaattcagctcggcgatgcccctagag
gaaggcgacacgttcttctacgccccaagacagctgcagaatctggtgttggtcgacgag
cttgattccctctctcccataatggcctgccagattgccgatttggccaatgaagacaca
ccccagttgtatacggtctgtggacgagggccgaggtcgtcccttagggtgttacgtcac
ggtctggaggtcagcgaaatggccgtctcggagctgcccggtaaccccactgccgtctgg
accgtgaggaaacgcggtgaagaccaatacgactcctacatcatcgtttccttcgtcaac
gccacgctggtcttgagcatcggggaaacggtcgaggaagtaacggactcgggattcctg
gggaccacgcccactctggcctgttctcagctcggtgacgacgctttggttcaggtttat
ccagatggtatccgacacatccgagcagatcgccgagtcaacgagtggaaggccccaggg
aagaagaccatcgttagatgcgccttgaatcaacgtcaggtcgttatcgccctgacagga
ggagagatcgtctatttcgagatggatcccacaggacagctgaacgagtacacagagagg
aaggaaatgaagagtgacgtgatctgcatgggggtcgggcgagtgccgtcaggggagcag
cgatcgcgcttcttggccgtcggactgtctgataacaccgtccgaatcatcagccttgac
cctaatgactgcctgacggtgcgaggtatgcaggcccttcccgccctgccagagtccctc
agcgttatcgagatgggcgggcaggaaggctctgagaatgagcctcgtactttgggctct
ctctacctcaacattggcctccagaatggcgtactcttgcgaaccgtcttggactcagtg
acaggggatatgtctgacacccgtactcgttatctgggttcccgccccgttaagctgttt
aggatcatcatgcaggggaacgagtcggtgctggccatgtcatcccgttcctggctttca
tactactaccagaacagattccacttgactcccctatcatacgagagtctggagtacgcg
gcggggttctcgtctgagcagtgtcccgagggtattgttgccatctccacgaacaccctc
agaattttggcattggagaagctcggagcggtgttcaatcaggtgtcgcatcccctggag
tacacgccacgcaagttcgtcatccacccagagagcggacacctggtggtcatagagaca
gaccacaacgcttacacagacgacaccaagaggcagcgtaagatgcagatggccgaggaa
ctaagagaagccgcaggagaggaagagacagaggtcgctgacaggatggccgaagcgctg
ttgtccgaggatcttcccgactcggtgttcggagcccccaaagccgggccgggcatgtgg
gcgtctctggtgcgtatcatcgagcccatacaaggcaacacgcttcacacgatacgattg
gaccagaacgaggctgccttcagtatttcgttggtgaagttcgccaatcagacggatatg
gatcaacaacatcttctggtgggtacggtcaaggactaccagcttagccctaggattgtc
gactgtggctacatatactgctatagagtcgtcggggattgcaccagcctagagctcgtc
catcgcaccgaagtcgaggacattcccactgccatctgctcgtacaatggccgcgtgctg
attggtgtgggccgcctgctgagaatatacgacctgggcaagaaaaagctgttgcggaaa
tgtgagaataagcacatccctaacctcatcgtggacatcaaggctcgaggccaacgggtg
tttgtcagcgatgtccaggagagtctgttcgtgctgcgttacaagagacaagagaatcag
ctcatcatattcgtggacgacaccaaccagcgctgggtcaccacgtcgtgtctcctggat
ttcgacaccgcagccgtcgccgacaagttcggtaatattgccgtggtgagactgggcgga
gatataaacgacgatgttgacgaggatcctacaggcaacaaggcattatgggaccgcgga
ctgctgaacggcgcgtcgcagaaggccgaggtcatcgccaactttcacgtgggcgagacg
gtgaacacccttgagaaagcaacgccgattcctcgaggcagtgagtcgctggtgtacaca
acctcagcggacgtgtcaagtgttggtgccgctacgtcgcgaagactacttaactgtttc
cagaatctggagatgcatatgaggtctgaacacccgcccctgtgtggccgtgatcacctg
tccttccgatcgtatttcttccccgtcaagaacgtcatcgatggggacatatgtgaacag
ctcaatatggtcgaccaggcaaaacaacgcagcatatccgaagacttagacaagacccct
aacgaactgtccaagaggttagaggatatcagaacgcgatatgccttctag
DBGET
integrated database retrieval system
