Homarus americanus (American lobster): 121857801
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Entry
121857801 CDS
T07477
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
hame
Homarus americanus (American lobster)
Pathway
hame03013
Nucleocytoplasmic transport
hame03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hame00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121857801
03015 mRNA surveillance pathway
121857801
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hame03019
]
121857801
Enzymes [BR:
hame01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
121857801
5.6.2.5 RNA 5'-3' helicase
121857801
Messenger RNA biogenesis [BR:
hame03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121857801
mRNA cycle factors
Common to processing body (P body) and stress granule
121857801
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
Helicase_RecD
ATPase
NPHP3_N
AAA_16
AAA_22
nSTAND3
SRP54
AAA_32
Herpes_ori_bp
PhoH
AAA_7
Motif
Other DBs
NCBI-GeneID:
121857801
NCBI-ProteinID:
XP_042209960
LinkDB
All DBs
Position
Unknown
AA seq
1122 aa
AA seq
DB search
MSVDAYGPSSQSLTFYDTEENDLLGADTQGSEYEFNLTLGSQTQTQGDPLDKTQPTQSQV
TVNGDVAETEVEKTTEALADLQFEEEDEENAFYTKELPEWACRYCGIHDPASAVMCNVCH
KWFCNGRGNTSGSHIINHLVRAKHKEVSLHKDGLVRDTVLECYACAVKNVFVLGFIPAKA
ESVVVLLCRQPCAAQSSLRDMNWDPEQWKPLINDRALLPWLVRVPSEAEQLRARQITAQQ
INKLEELWKENASATFDDLERPGVDEEPQQVCLRYEDGFQYQNIFGPLVKLEADYDKKLK
ESQTQDKIEVRWDIGLNKKICAYFTLAKTDGDMRLMHGDELRLRYLGDLHKPWSGVGHVI
KIPDNFGEEVGIELKSNVGVPTDCRDKFVVDFVWKSTSFDRMQAALRKFAVDDSSVSPYI
YHRLLGHVEVDELIFRHIHLPKQLSAPNLPTLNNSQQYALKHALQRPLSLIQGPPGTGKT
VTSATIVYQLVKQTGGSVLVCAPSNTAVDQLTEKIHKTGLKVVRLCAKSREAIDSPVSFL
ALHNQIRSLEDNGELQKLQQLKEETGELSSADEKRYRMLKKQAEKTLLEAADVICCTCVG
AGDPRLARLKFHSILIDESMQATEPECMVPVVLGAKQVILVGDHCQLGPVVMCKKASRAG
LSQSLFERLVVLGIRPFRLTVQYRMHPQLAQFPSNFFYEGSLQNGVADADRTMKGVSFPW
PQADKPQFFYVTSGQEEIAGSGTSYLNRTEASSVEKLVTRFLNSGVKPEQIGVITPYEGQ
RAYLVQYMQYQGPLNQKLYQRLEVASVDAFQGREKDLIIMSCVRSNEHQGIGFLSDPRRL
NVALTRARYGIIIVGNPKVLSKQGLWNHLLHHFKEKKVLVEGPLNNLKESMMQFSKPKRL
INATNPGSHFMNTAMYDAREAMVPGSMYDRSGPINGSAPPPSPYFRGPQYDMYGRAHDSL
DYISADHSQPGLNNLPVPVGMFMNMAHVPPRFYQQHQQALAQARGSRGGARGGRAGSRKV
TKNMGGAAGALQLSQPFSQDPSMQSYSQPGLTQGHLSQGMSGPVLSGLSQGGLSQAELSQ
DSYMVDQFQSQTDGLLSQDSTYQGDRAFFTPASQTHHFSQPY
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggacgcgtacggccccagctcacaaagtctgaccttttatgacaccgaggaa
aatgacttattgggggctgacacacaggggtccgagtacgagttcaacctcacactgggc
agtcagacccagactcaaggagacccgctggacaagacacaacccacccagagtcaggtg
actgtgaatggagatgttgcagaaactgaagtagagaagacaacagaagcacttgctgac
ctacagtttgaggaagaggatgaagaaaatgctttctacaccaaggagctgccagaatgg
gcatgccgatactgtggaatccacgatccagcatctgctgtcatgtgcaatgtgtgtcac
aagtggttctgcaatggacgtggtaacacctctggctctcacatcatcaatcaccttgtt
cgggccaagcataaggaagtgagcctccacaaggatggacttgtgagagacaccgttctt
gaatgttacgcttgtgccgtcaagaatgtctttgtgcttggctttattcctgccaaggca
gagtctgtggtagttcttttatgtcggcagccatgtgctgcacaaagttctctcagagac
atgaactgggacccagaacagtggaagcccctgatcaatgaccgtgctctactgccatgg
cttgtgcgtgtgccttcagaagcggagcaactccgtgcccgccagattaccgcccagcag
attaacaagctggaagaactgtggaaggagaacgcttcggcgacatttgatgacctagag
cgtcctggggtggacgaagagccccagcaggtttgcctaagatacgaggatggttttcag
tatcagaatatatttgggcctttagtgaagttagaagcagactatgataagaagttgaag
gaatcgcagacccaagacaagattgaggtgcgatgggatattggcctgaacaagaagatc
tgtgcctatttcacccttgccaagactgatggagatatgaggttgatgcatggtgacgaa
ttgcgcctcaggtatttgggtgaccttcataagccctggtctggggttgggcatgtcatt
aagatccctgacaactttggagaggaagtggggattgaattgaagtccaatgtgggtgtg
cccactgactgtagggacaagtttgtggtggactttgtgtggaaatcgacaagctttgat
aggatgcaggcggctttacgcaagtttgctgtagacgactcctcagtttctccctacatc
tatcaccgtctcctggggcacgttgaggtggacgagctcatattccgtcacattcatctc
ccaaaacaactgtcggctccgaaccttcccaccttgaacaattctcagcaatatgccttg
aagcatgcccttcagcgtcctctgtcattgatccaaggccctcctggcacgggcaagaca
gtgacctcagccaccattgtgtaccagctggtgaagcagactggtggctctgtcctagtg
tgtgccccttccaacacagctgtagatcagcttacagagaagatccacaagactggtctc
aaggttgtccggttgtgtgccaagtctcgcgaggccattgattctcctgtctctttcttg
gccttgcataatcaaattcgcagtcttgaggacaatggtgagcttcagaagctacaacag
ctcaaggaagagacaggggaactgtcatcagcagatgagaagcgttaccgcatgttgaag
aaacaagcagaaaaaactcttctagaagctgctgatgtcatttgctgcacttgtgttggt
gccggggatcccagacttgcccgccttaaattccactccatccttatcgacgagtctatg
caggccacagaacctgagtgtatggtgcctgttgttctcggcgccaaacaagttatcctg
gtgggtgaccattgccagttgggaccagtggtcatgtgcaagaaggcttcaagggcgggc
ctttcccagtccctctttgaacggctggttgtcttgggcatccgacctttccgccttacc
gtccagtaccgcatgcacccacagctggcccagtttccctccaactttttctatgaaggg
tctcttcagaatggtgttgctgatgctgatcgtacaatgaagggtgtaagtttcccttgg
ccccaggcagacaaacctcagttcttctatgttacatctggccaggaagagattgctggt
tcagggacctcatacttgaaccgtacagaggcctccagtgtagaaaagttggtaacacgc
ttcctcaactcaggagtgaagccagagcaaattggcgtcatcacaccttatgaaggccaa
agggcttatttggttcagtacatgcaataccaaggtcctttgaaccagaagctctaccag
cgtttagaggttgcaagtgtggatgccttccaagggcgagagaaagacctcatcattatg
tcttgtgtgcggtccaacgagcaccagggtattggctttctctcagatccacgaagactg
aatgtggctcttactcgagctcgttacggcatcatcattgtgggcaaccccaaagttctc
tctaagcaagggttatggaatcacttactccatcactttaaggaaaagaaagtcttggta
gaaggtccattgaataatttaaaagaatcaatgatgcagttcagcaaacctaagaggctc
atcaacgccaccaacccaggttctcacttcatgaacacggccatgtatgatgcacgagag
gccatggtgccaggctctatgtatgaccgctcaggccccatcaacggctcagcacctccc
ccttcaccatacttcagaggaccacagtatgacatgtatggacgtgcacatgattcgctg
gactacatctcagctgaccactcccaacctggacttaacaacttacctgtaccagtgggg
atgttcatgaacatggctcatgtccctccacgattttaccagcagcatcaacaagctctg
gctcaggctcgaggtagccggggtggagctcgtggaggccgagcagggtcaaggaaggtg
accaagaacatgggtggtgcagctggtgctcttcagctctcacagccattcagccaagat
ccatcaatgcaaagctactcccagcctggccttacacaaggtcatttgtcacagggtatg
tctggacctgtcctaagtggattgtcccaaggaggcctatcccaggcagaattatcccaa
gactcgtacatggtggaccagttccagagtcagacagacggcctcctctcccaagactct
acgtaccagggcgaccgtgcgttcttcactccagcatcacaaacgcaccacttctcgcag
ccgtactga
DBGET
integrated database retrieval system
