Homarus americanus (American lobster): 121858937
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Entry
121858937 CDS
T07477
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase hyd-like
KO
K10593
E3 ubiquitin-protein ligase EDD1 [EC:
2.3.2.26
]
Organism
hame
Homarus americanus (American lobster)
Pathway
hame04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
hame00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121858937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
hame04121
]
121858937
Enzymes [BR:
hame01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
121858937
Ubiquitin system [BR:
hame04121
]
Ubiquitin ligases (E3)
HECT type E3
121858937
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HECT
E3_UbLigase_EDD
MLLE
zf-UBR
RCC1_2
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
121858937
NCBI-ProteinID:
XP_042211525
LinkDB
All DBs
Position
Unknown
AA seq
2872 aa
AA seq
DB search
MTSLHCVIHPLPGTEDQLNERLKELGLRLNWSGGVGVSAVAGLRENIRQVAIGPSHIAVL
TEDGRVARLVFSINTDALDLNKADHKQGSCNKSSSQSSTKLTARMSTGGRRIVCTSGSGG
VRGRGAGVIMGSSRPMLPAQYVPEELISQAQVVLQGRSRNLIIRELQRTNLDVNLAVNNL
LSRDDEDVEEPEESGDSFVPEDLISLLDAGISVAADHPSVIIDADAMFSDDMFGYSLWRS
RSGGSRGXGERDREGSAGSTGSEHRGERELRWRDCTTRDPVRVSNALLSVRVTQPHTEKD
SLLPDAIDVADSLQYWPERQGNQPAPRFTHIAALHSELVAVSTTGQLYQWRWADKDPYVH
PELSTVHHPKAVPLGLAGERVVAISAAGVRCSVATESGRVATWLDETLADVATKLEQPAQ
SFPELQNDRILSLHTCQLYTCAWCESGSLYWWGVLPFNQRKKLWEKFRSKSRKQRSEITE
GVQVGMRSSPMYHSGALAFSTSGGVPKIGQLLNAAWNLSDTCRFKILPPGGVTSGGGSSG
SSSSNSNGSGGSTGGCNSSTSSGFQTGSGSSSTAQSGVSNSSSSSSSNNSSSSSSGVSSG
GGEKKTLASEVLGSAAKILKCGDSKESSDKLDMPPPPSPASSTCSDTGSITSPASYKRGK
RPLPRDEMERFDEEEWPLRDVIFVEDTRPVPIGEVLAVDGNQVVVVPQTKEGKGNLRVIH
RDQLQVIRAGGNPRVPDCYQKTPKRIPVTEQGQILTVAVDGRGIHAIVKNGSRLTYVIYN
LSSGKAEQECVFPTDSTAFMGSEPSSISLTITGESENVGILRDGNSTIYPLSKDCVDSIK
DPHWPDLPPVSCLGVATHFLHGAGAHQKNHVALLVLALKTQTLMPKILRCDPEGVRQVLA
LIENDNPNGVSSLTTEAIVEEKCDGNRNILHACISTCCPVTSKETEGESVLEKDPILGSF
AWPPSSSDTLSDTASAAGPDDDLMTPSSSKTTPGPSMPTLGSSDPTERKSYSLTILRTIC
DSPALTPHLRSMLTARDSNGFTPFMLAVSGRAYQAALILFDVIHRVAHDSAMDAESERRA
ITQMIFPRGSNPDDSPLHVLCYNDTCSFTWTGAEHINQDIFECRTCGLVGSLCCCTECAR
VCHKGHDCKLKKTSPTAYCDCWEKCKCKALKSGHQTARFDLLSRLITETDLVNVANGRGE
NLLLFLVQTVGRQVTEQKQWSRCRSSSSTRKNPLSDAVNMEVPDHDLEPPKFSRRALERL
LNDWAAVRAMIMTGHKEENPPTTASTDEINFMQYQGHTTHLDKFTYCLLVKLATQVEHRN
LKLKQLINSDDDERKMIADTMVTALINTLIRELHNDAVPGRKQEAEKVARRFIASVVRIF
VILAIEMIPNVSKKKPGSSYTQPLAKCIKVFESVIPVAVTELCDAADALMLPVRLNYVKP
TAPFPLTSTHVDANHGCKEMFEVEPLQRHQQRVGGSIVDQSPASGSGSGGDSGSGNVGGG
EEVEEAGEEEVAPSMSRPSPAPVARPRRARPDHILPPQVDDHDNEGGSERDDANERSEQD
GDGGGEVEGGESDMELDLLAESDSDSDDNQSAVDNTSAQRSVQTGATAGSDGEDDSGESS
PGEDEDDESEAAETDEFDSGELFSDEQLERRGNTSSTARNIAPHNLQWAVRNPRDSSSRS
GGTAGGPTATGSSSTTSSGLIYIDPTSLRHGPTSNSTVTPSSHEPVSLATTNNTLARAFT
IVVRQMSSLLSLACDVVRDGGLTSRTPGGGGIPGSSGSSTTTTQMCLTPTIIAALLKQVD
ARLQPTWDWLLSLMDSTESQLRFGRELNQLIEGSGGASAATITPPAGIPASRPRERSAGR
TGLPFIRDPLTGPLSRYQSARRGTRATTTTADPQNARRDTLSYVVSLLRAHKNEHCDTLP
DIDVGSLKHIAYVFDALISYLRCCESDSSAHIDSGGAECTGFSWERDENENEDDMDDLPS
ITPSAGDSESADEDSNLSNSRGRKHTFFQRSQSTLCLGSVGADVFTSSLQEALPLADKPH
LLQPNARREELFGIPRAHTHNAGHGTRTPLDAPLSRLGVLENLHMVGPYPPTPQQSYAHM
LGSTRTLDHQPTDLSLYTTGQLRDLKDEDISEDSGETSQERAPIIVSPRRTGSSLGEGIS
DHSSGGATYTAESTTPARSSVKSVIVRIGSSAVSNAFKPEVGTASSLSSSLAASTSTTTC
TPSGPLGGRSGADLLVVPLDGRGSRGPEVGLHAPHDVSANVTIDTTHDHMKPALLRSGVS
QDLLLGRWRLTLELFGRVFIDDVGAEPGSIIAQLGGFPVKEAKFRREMEKLRNCQQRDLN
LTKIDRERGQLVTQTFKELNTQYNNYHRRGTQSSPPLAVNRVKVTFRDEPGEGSGVARSF
YTAIAEALLSGEKLPSLEPCQVRPKEVGLSVVRYSLYGQYKGRDRDRRQGASSSRSLQRR
EARKTLTVDARPFYMTGEGTSNEHLPSNMLQIGEVLFPKVQSLRPSLASKITGMLLELTH
AQLLLLSASEDALRQKVDEAVDLILAQGRDHTPEYSPSHQDTDEGGEEPEDASAPLFYQP
GKRGFYSPRQSRPTPERLNAFRNVGRLLGLCLLQNELCPIYLNRHVLKYILGRPVRFHDL
AFFDPVMYESLRKLVLDAENKDTGTDVFKALDLTFSIDVIPEEGGTNIELISGGRNVEVT
TGNVYDYVRKYAEYRMVKSQEKALQNIRDGVFDVIPGGYLDSLTAEDLRLLLNGVGDINV
ATLISYTSFNDESAESNDRLNKFKRWLWSIVEKMTNQEKQDLVYFWTGSPALPASEEGFQ
PMPSVTIRPADDSHLPTANTCISRLYIPLYSTRAILRSKLLLAIKTKNFGFV
NT seq
8619 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcgttgcactgtgtcatccatccactgccaggcactgaggaccagcttaatgag
aggctgaaagaactaggccttcgtctcaactggtctggtggtgttggggtgagtgcggtg
gctgggctgagggagaacattcgacaggtggccataggtccatctcacattgcagtactc
acggaagatggccgcgtggctcgtctggtcttctccatcaacaccgatgctctcgacctt
aataaagctgaccacaaacagggaagttgcaacaagagcagtagtcagagcagcaccaag
ttgacggctcgcatgtccaccggcggccggaggattgtttgcacttctgggtctggtgga
gtgcgtgggcggggtgcaggggtcatcatgggctcatcgcgccccatgttgcctgcacag
tatgtcccagaggagctgatatcccaggctcaggtggtgcttcagggcaggagccgcaac
cttattatcagagagctgcagagaaccaacctggatgtgaacctggcagtcaacaactta
ctgtcacgggatgatgaggacgtggaggagcccgaggagagtggtgactcctttgtacca
gaagacctgatatctctactagatgctggcatatctgtggctgctgaccatccctcagtc
ataattgatgcagatgccatgttctcagatgacatgtttggatattccctgtggcgcagt
cgatcaggtggaagccgtgggncaggtgagagagaccgtgagggttctgcaggttccacc
ggttcagaacaccgcggtgagcgtgaactgagatggcgtgactgcactactcgggacccc
gtaagggtctccaacgctctgctgtcggttagagtcacacaaccccacacagaaaaagat
tccctgctgccagatgctattgatgtggcagacagcctacagtactggccagagagacaa
gggaaccagcctgccccgaggtttacacacattgctgccctccactccgagctggtcgct
gtgtccaccaccggacaactctaccagtggcggtgggcagataaagacccatatgtgcac
cctgagctatcaactgtgcaccaccctaaggcagtgcccctgggactagcaggagagaga
gtggtggccatcagtgctgctggtgtcaggtgcagtgttgccacagagtctggtcgtgtg
gccacttggctggatgagacactagctgatgtagccaccaaattggaacagcctgcccag
tccttcccagagttacagaatgaccggatactgtccctccacacgtgtcagctgtacacg
tgtgcgtggtgcgagtctggctcactctactggtggggcgtcctgccctttaaccaacga
aagaaactttgggaaaagtttcgcagcaagagtcgtaaacagcgctcagagatcactgag
ggagtgcaggtgggtatgcggtcgtcccccatgtaccactccggggccctggcattctcc
acttcgggaggtgtgcctaagatcggccagttgttgaatgctgcctggaatctcagtgac
acttgcaggttcaaaattcttcctcctggaggagtgaccagtggagggggcagcagtggg
tccagcagcagcaacagtaatggtagtggaggcagtacaggaggctgtaacagcagtacc
tcatcagggttccagacaggtagcggcagctcttccacagcacagagtggggtatcaaac
agcagcagcagcagcagcagcaacaacagcagtagtagcagcagtggtgtgagcagcgga
ggcggagagaagaagaccctggcatctgaagtgttggggtcggcagccaagattctcaag
tgcggtgatagcaaggagtcatcggacaagctggacatgcctccccctccctcccctgcc
tccagtacctgctctgacacaggatccataacgtccccagcctcatacaagcgaggtaag
agaccattacctcgtgatgagatggaacgatttgatgaagaggaatggcctctgcgtgat
gtaatctttgtagaagacacaagaccagtacctattggggaggttcttgctgttgatggc
aatcaggtggttgtggtgccccagacaaaggaaggtaaaggtaacttgcgtgtcatccac
cgtgatcagctgcaggtgatccgtgccggggggaaccctcgtgtccccgactgttaccag
aagacccccaaacgtatcccagtgacggaacaaggccagatcctcactgtggccgtggat
ggcagagggattcatgccattgttaagaatggcagccggttgacgtacgtgatctacaac
ctcagttcagggaaggccgagcaggagtgtgttttccccactgacagtacagcatttatg
ggttctgagccttctagtatttctctcaccattactggggagagtgagaatgtgggtatc
ctgcgtgatggcaacagcaccatatacccactgagtaaagactgtgtggactccatcaag
gatcctcactggcctgacctgcctccagtgtcctgcttgggagtggccacgcatttccta
cacggggcgggcgcacatcaaaaaaaccacgttgccttgctcgtgttggcactgaagacc
cagactctgatgcctaagatcctgcgctgtgatcccgagggcgtgaggcaggtcttggca
ctgattgaaaatgataaccccaatggtgtgtcaagtttaacaacagaagcaatcgtggag
gagaagtgtgatggaaaccgcaatattcttcatgcttgtatctccacctgttgcccggtc
acaagtaaagagacagagggagagtcagtgttagaaaaagatccaatattgggtagcttt
gcttggcccccaagttcctcagacacactgagtgacacagccagtgctgccggtccagat
gatgacctcatgactccgtcttcttccaagaccactccaggacctagcatgcccaccttg
ggatcgtccgacccaacggaacgcaaatcctactctttaactatactgcgaactatctgt
gacagtcccgcactgacgccacacttgcgtagcatgttaacagcccgcgattcaaacggt
tttactccgttcatgctggccgtttcaggccgagcgtaccaggcagccctaatcctcttt
gatgtgattcaccgcgtggcacacgacagtgctatggatgccgaaagtgagcgccgggcc
atcacccaaatgatatttcctcgtggcagcaaccccgatgactctcctcttcacgtgctc
tgttataatgacacgtgctccttcacttggacaggcgccgagcacatcaaccaggatatc
tttgagtgccgaacttgtggacttgtcggctccttgtgctgctgtacggagtgtgcgaga
gtttgccacaagggtcacgattgcaagctcaagaagacttccccaactgcttactgtgat
tgctgggaaaagtgcaaatgtaaagccctcaaatctggacatcaaacagctcgctttgac
cttctctctcgcctcataacagaaactgatctggtgaacgtagccaatggcaggggggag
aatcttctcttatttcttgtacaaacagttggacgccaagtgacggaacagaagcagtgg
tcaagatgccgttcgtcatcctccacccgtaagaaccctttgtcagacgcggttaatatg
gaggttcccgaccatgacctggaaccacccaagttcagccgccgtgccctggaacgcctt
ttaaatgattgggcggcagtgagggccatgatcatgaccggtcacaaggaggagaacccc
ccaactactgcctccactgatgaaataaactttatgcagtaccagggccacaccacacac
cttgacaagtttacctactgtttacttgttaaattagcaactcaggtcgaacatcgtaac
ctgaagttaaaacagttaataaatagcgacgacgacgaacgtaagatgatcgccgacacg
atggtgaccgcactcattaatacactcattagagaacttcacaatgatgctgttcctgga
cgcaagcaagaggcagagaaggtggctcgaaggtttatagcttcagtggtgcggatattt
gtcatcctggccatagagatgattcccaacgtcagcaagaagaagccgggcagttcttac
acacagccacttgccaaatgtataaaggtgtttgaatcagtgattcctgtagctgtgacc
gagctgtgtgatgctgctgatgctctcatgctgcctgtgcgcctcaactatgtcaagccc
acagcaccgttccccctcacttcaactcatgttgatgctaatcatggttgcaaggagatg
tttgaagttgagccccttcagcgacaccagcagagggttggtggaagtattgtagatcaa
tctcctgcgtctggcagtggcagtggaggagacagtggaagtggaaatgtcggaggagga
gaagaagtggaggaagctggggaggaggaggtagcacccagtatgtctcgccctagtccg
gctcctgtggccagaccaaggagggctcggccagaccacatcctccctcctcaggtggat
gaccatgacaacgaaggaggtagtgaacgcgacgatgccaacgaacgctccgaacaagac
ggagacggaggtggcgaagtagagggcggagaatccgacatggaactagacctcctggca
gagtcagacagcgacagtgacgacaatcaatctgctgttgacaacacttcggcacagagg
tccgtgcagaccggtgccaccgctggcagtgacggagaggatgactccggggaatcttct
cccggggaagacgaggatgacgaaagtgaagcagcagagactgatgaatttgattcagga
gagctgttctctgatgagcagctagagaggcggggcaacacctcatctaccgcacgtaac
attgctccacacaatctgcagtgggcagtaaggaaccccagggacagcagctcacgctca
ggaggcaccgcaggaggacccactgcgactggttcctccagcacaacatcaagtggctta
atctacattgacccaacttccctaagacacggtccaacatccaactctacggtgaccccc
tcatctcacgagccagtcagtctggccaccaccaataacacactagccagagccttcacc
attgtggtgagacaaatgagttcccttctcagtttggcatgtgatgtagtgagagatgga
ggccttacctcaaggacgcctggaggggggggcatccccggcagtagtggcagcagcacc
actaccactcagatgtgcctcacacccaccatcattgctgctcttctcaagcaggtagat
gcacgccttcagccgacctgggactggttactcagtctcatggattcaactgaatcacag
ctcagatttggccgtgagttaaaccagctgatagaagggagtggtggtgcgagtgctgcc
accataacaccacctgcagggatccccgcctcgcgtccccgggagagaagcgccggacgc
acggggctgccgttcattcgagaccctctgacgggtcctctgtctaggtatcagagtgct
agacgcgggacccgtgccacaaccaccacggccgacccgcagaatgccagaagagacaca
ctctcttatgtggtgtccctcctgagggctcacaaaaatgaacattgtgatacattgcct
gacattgatgttggttcactaaagcatatagcatacgtgttcgatgccctcatcagttac
ctgcggtgttgtgagagtgacagcagtgcccacatagactcaggtggagcagagtgcact
gggttttcgtgggaacgcgatgagaacgagaacgaagatgacatggatgatctgccttct
atcacaccttcggctggggacagtgaatctgcagatgaagactccaatctgtcaaattct
cgtggcagaaaacacacatttttccagagatcacagtcgaccttatgcctgggatcagta
ggagcagatgtgttcactagcagcttgcaggaggctttgccacttgctgataaaccacat
cttcttcagcccaatgctcgcagagaagaactctttggaattcctcgtgcacacactcat
aatgctggtcatggtacaagaacgcctttagacgctcctctgtctcggcttggcgtgtta
gagaacctgcacatggtggggccctacccacccactccccagcagtcttatgcacacatg
ttgggatctacacgcacacttgaccatcagcccactgacctctccctctacaccacagga
cagttgagagatttaaaggatgaagatattagtgaggacagtggagaaacatctcaggaa
cgagcccccatcattgtatccccaagaagaacgggcagcagcttgggtgagggaatatca
gaccacagcagcggtggtgccacgtacacggccgagtccactacacctgctagatccagc
gtcaaaagtgtgattgtcaggattggttcatcagctgtatctaatgcatttaaacctgag
gttggcacagcatcatcgctgtcgtctagcctggcagcttcaacatccaccacgacctgc
actccctcgggccccttaggggggcgtagcggagcagaccttcttgtggttcccttggac
gggcgaggtagtcggggccccgaggtaggcctgcacgcaccccatgatgtgtcagccaat
gttaccatcgacactacacatgaccatatgaaaccggcattattaagaagtggagtatct
caggatttgctgttgggacggtggagactgacgttggagttgtttgggagagtatttatt
gatgacgttggagctgaacctggctctattattgcccagcttggaggtttccctgttaaa
gaggccaagtttagaagagaaatggaaaaacttaggaactgtcaacaacgggacctgaat
ctcactaagattgaccgtgagagaggacagctagttactcaaacgtttaaggaactcaac
acacagtacaacaactaccacaggcggggcacacagtcgtctccgcctctagcggtgaat
cgtgttaaagtcacattccgggacgagccgggtgaagggtcaggagtggccagatccttt
tacacggccattgcagaggctctcttgtccggggagaagctccccagcctggaaccctgc
caggtgaggcccaaagaagttggactctctgtggtgcgatacagcttatacggccagtac
aagggtcgtgacagagaccgtcgccagggtgcgtcatcttcgcgctctttacaaaggaga
gaagcccggaagacgctcaccgtcgatgcccgcccattttacatgacgggagaagggacc
agcaatgaacatctgccctccaacatgttgcaaattggagaagtgctcttccctaaagtg
cagagcctcagaccatctcttgccagcaaaatcactgggatgttgttggagttgacacac
gcccagctgctgctgctctcggccagtgaagacgctctccgccagaaggtggacgaggca
gtggatctcattcttgcccagggcagagaccacaccccagagtattccccatcacaccaa
gacacagatgaaggtggggaggaacctgaggatgccagtgcacctctgttttaccagcca
ggcaagagaggtttctactctcctagacagagtcgaccaactcccgaaagactaaatgca
ttccgcaatgttgggagacttctggggctgtgcttactacaaaatgagctgtgtcctatt
tatttaaaccgacacgttctaaaatatattctggggcgtccagttcgcttccacgacctg
gccttctttgacccagtgatgtatgaaagtttacgcaagctggtgctagatgcagagaac
aaggacactggcactgatgtattcaaagcactggaccttacattcagtattgacgtgatc
ccggaggaaggtggcacaaatatagagctcataagtggaggacggaatgtagaagtaact
actggtaacgtgtacgactacgtgcgcaaatatgccgagtatcgcatggttaaatctcaa
gaaaaagccttgcaaaacatacgtgatggagtgtttgatgtcatccctggaggttattta
gactctctcactgctgaggacctacgattgttgctcaatggggttggagatatcaacgtt
gccactctgatctcgtacacgtcgttcaatgacgagagcgccgagtctaatgatcgtctc
aacaagttcaagcgttggctctggtccatcgtagaaaaaatgactaatcaggagaagcag
gatctggtctacttttggactggttcaccagctctaccagcatctgaagaagggttccag
cccatgccgtcggtcaccatccggcctgccgatgactcccacttacccacggccaacacg
tgcatcagccgcctctacatccctctctactcgactcgtgctattttacgctccaaactc
ctgctagccattaagaccaaaaactttggctttgtttga
DBGET
integrated database retrieval system
