KEGG   Homarus americanus (American lobster): 121860759
Entry
121860759         CDS       T07477                                 
Name
(RefSeq) THO complex subunit 3-like
  KO
K12880  THO complex subunit 3
Organism
hame  Homarus americanus (American lobster)
Pathway
hame03013  Nucleocytoplasmic transport
hame03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:hame00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    121860759
  09122 Translation
   03013 Nucleocytoplasmic transport
    121860759
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hame03019]
    121860759
   03041 Spliceosome [BR:hame03041]
    121860759
Messenger RNA biogenesis [BR:hame03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     121860759
Spliceosome [BR:hame03041]
 Complex C
  Other components
   EJC/TREX
    121860759
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    121860759
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st WD40_CDC20-Fz Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_Prp19 WD40 Beta-prop_EML_2 WD40_WDHD1_1st ANAPC4_WD40 WDR55 Beta-prop_WDR3_2nd EIF3I Beta-prop_WDR19_1st WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_Aladin WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd eIF2A Beta-prop_NOL10_N DSE1_N Beta-prop_IFT140_1st RMC1_N Beta-prop_EML Beta-prop_Vps41 WDR90_beta-prop_4th Beta-prop_WDR35_TULP_N Tricorn_2nd NBCH_WD40 Beta-prop_EIPR1 PAC11 Beta-prop_HPS5 Beta-prop_WDR75_1st Beta-prop_TEP1_C PROPPIN TRM82_WD ASA1 Beta-prop_WDR11_1st CFAP251_N WD40_RFWD3 Peptidase_S9_N KNTC1_N PD40 Beta-prop_NUP159_NUP214 Beta-prop_ELP1_1st Beta-prop_VPS8 Beta-prop_SCAP DPPIV_N Beta-prop_Nup120_160 WD_LRWD1
Other DBs
NCBI-GeneID: 121860759
NCBI-ProteinID: XP_042214042
LinkDB
Position
Unknown
AA seq 325 aa
MGSYLEDMKTYFKTHNKQKEYVGHNSKVHTIGWNADGRRLASGSYDKCVTIFVFDGHRET
LRKDYTYKGHGDSVDQLCWHPTHSEQLTSASGDKTVRIWDTRTHKCSATINTKGENINIT
WSPDGHTIAVGNKEDLVSFIDVRSQKIRHEQQFKFEVNELSWNNANDLFYLTNAQSGQGY
IHIYNYPEMELVHSIHAHPGNCICIKFEPHGHYFATGSADALVSIWDAQELYCKMTLSRL
EWPVRTLSFSHDGQLLASGSEDQTIDIAHVSTGEQVAHISVAYPTFTLAWHPRDFLLAYA
CDDKDDRDRDRDAGTVKLWGLGERS
NT seq 978 nt   +upstreamnt  +downstreamnt
atggggtcgtacctagaagatatgaaaacatatttcaagacgcacaacaaacagaaggaa
tacgtgggtcataactctaaggtccacaccatcgggtggaacgctgacggtcgtcgcctg
gcgtctggctcttatgacaaatgtgtcaccatctttgtgtttgacggccaccgcgagact
ctgaggaaggactacacatacaaaggtcacggggacagcgttgaccagctgtgttggcac
ccaactcactctgagcagctcacctcagccagtggggacaagactgtcaggatctgggac
acacgtactcataaatgctcagccaccatcaataccaagggagagaacatcaatatcact
tggtcaccagacggccacaccatagcagtaggtaacaaggaggacctggtgtcatttatt
gatgtgcgcagtcagaaaatacgccatgaacaacagttcaagtttgaagttaatgagttg
tcatggaataatgccaatgacctattctacctcactaatgcccagagtggccagggatac
atacacatctacaattaccctgaaatggaactggtccactcaatccatgcccaccctggt
aactgcatctgtatcaagtttgagccccatggacactactttgccacaggctcagccgat
gctcttgtgtctatttgggatgcacaagaactctactgcaaaatgacattatccagatta
gagtggccagtccgcaccctcagcttttcacatgatggacaattgttggcatcaggcagt
gaagatcagacaattgatatcgcccatgtcagcacaggagaacaggtggcacatatcagt
gttgcatatcctaccttcacactagcctggcacccccgggattttcttctggcatatgct
tgtgatgacaaagatgatcgtgatcgtgaccgtgatgctgggacagtcaagctctggggt
ttgggtgagcggagttaa

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