Homarus americanus (American lobster): 121861506
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Entry
121861506 CDS
T07477
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB-like
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
hame
Homarus americanus (American lobster)
Pathway
hame03022
Basal transcription factors
hame03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hame00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121861506
09124 Replication and repair
03420 Nucleotide excision repair
121861506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hame03021
]
121861506
03400 DNA repair and recombination proteins [BR:
hame03400
]
121861506
Enzymes [BR:
hame01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
121861506
Transcription machinery [BR:
hame03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
121861506
DNA repair and recombination proteins [BR:
hame03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
121861506
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
TniB
Motif
Other DBs
NCBI-GeneID:
121861506
NCBI-ProteinID:
XP_042215236
LinkDB
All DBs
Position
Unknown
AA seq
789 aa
AA seq
DB search
MGKKHRFYDKGKKRRRDDGISDEEEGAELEGVPQASKHNVEERGDQVTPKDQYGAFDYRS
QMELREDHETRPLWIATNGHIFLESFSPVYKHAKDFLITIAEPVCRPEHVHEYKLTAYSL
YAAVSVGLQTHDIIEYLKRLCKTSLPPGICQFIQSCTLSYGKVKLVLKKNRYYVESDFPD
VIQKLIKHPAIQDCMLSPSEGVVSTEKEKSQAIMFTSHQAQMAGGSEEQKPDGKTDGDTA
NGETKEGENVPEDITDFYEKIDKADEEEEDDKNLKTLSFEVNQDKIEILQKTCIGLDFPL
LAEYDFKNDTVNEDIKIDLKPSAVLRPYQEKSLRKMFGNGRARSGIIVLPCGAGKSLVGV
TACCTVNKKALVLCNSGVSVEQWKQQFKMWSTATDDMICRFTSDAKDKPFNAGILVTTYA
MISHNQKRAYEAEQTMNWLKEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTATLV
REDDKIADLNFLIGPKLYEANWLELQKEGFIAKVQCAEVWCPMTPEFYREYLVGKVSDQK
IKLLCAMNPNKFRTCEFLIKYHENRNDKIIVFIDEVFALIHYAKTMQKPYICGKTGQKER
MTIIQNFKLNPKVNTIFFSRVADTSFDIPEANVLIEISSQGGSRRQEAQRLGRILRAKKG
AIAENFNAFFYALLSQDTREMGYSRKRQSFLINQGYAYQVITPAQMVGMNEEQLHYATRE
DKLQLIEQILAASDADLFEEGVTGERGVGSQRRMGNMGSMSGADDSIYGERRKGSKKDHQ
HYLFKKFRS
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atggggaaaaaacatagattctatgacaaaggaaaaaagcggaggcgggacgatggaatc
tctgatgaagaggaaggagcagaactggaaggtgtcccacaagcatctaaacataatgtt
gaggaacgtggagatcaggtgaccccaaaggaccagtatggagcctttgattatcgatca
caaatggagctcagagaggaccatgagactcgccccctttggatagccaccaatggccac
atctttctggaatctttctcacctgtttataaacacgctaaagactttctcatcaccatc
gctgaaccagtttgtcgtccggaacatgttcatgaatacaaactgactgcgtactcactc
tatgcagcagtaagtgttggtttacagacccatgatataatagaatatcttaagagatta
tgcaagacatccttaccacctggaatctgtcagtttatacagagttgtacattatcttat
gggaaagttaagttggtcttgaagaaaaatcgttattatgttgagagtgacttcccagat
gttattcagaagctcatcaaacacccagccattcaggactgtatgctgagtccgagtgaa
ggagtagtgagcacagagaaggaaaaatcccaagctataatgtttacaagtcatcaggct
cagatggcaggaggttcagaggaacagaagcctgatgggaagacagatggtgatacagct
aatggggagaccaaggaaggggaaaatgtacctgaagacatcactgatttttatgaaaaa
attgataaagctgatgaagaggaggaggatgataaaaatcttaagactctgtcgtttgag
gtcaatcaagacaaaattgaaattttgcagaaaacatgcattgggctagattttccctta
ttggctgaatatgattttaaaaatgacacagtaaatgaggacattaaaattgatctcaaa
ccatctgcagtgttacggccctatcaagagaagagcttaagaaagatgtttggaaatggt
cgtgcaagatcaggtatcattgtactcccctgtggcgctggtaaaagtttagtgggagtt
acagcctgttgtacagttaacaaaaaggctcttgttttgtgtaattctggcgtttcagtt
gagcaatggaaacagcagtttaagatgtggtccaccgctacagatgatatgatttgcagg
ttcacttctgatgctaaggacaagcctttcaatgctggtatcttggtgacaacttatgct
atgatttctcataaccagaaacgagcgtatgaagctgagcaaaccatgaactggttaaag
gaacaggaatggggtataatggttctagatgaagtgcataccatacctgccaagatgttt
aggagagttctaacaattgttcagtcacattgtaaactaggattaactgcaactcttgtt
agggaagatgataagattgctgacctcaacttcttaattggtcctaaattgtatgaagcc
aattggctggagctacaaaaagagggattcattgccaaggtacagtgtgctgaggtatgg
tgccctatgacccctgagttttatagggaatatctcgtggggaaagtatctgaccaaaaa
atcaagttgctctgtgcaatgaatcccaacaaattcagaacatgtgaatttctcataaaa
tatcatgagaatcgcaatgacaaaatcattgttttcattgatgaagtttttgcattaata
cattatgctaaaactatgcaaaaaccttacatctgtggaaagactggacagaaagagcgg
atgaccatcattcagaacttcaagttaaatcctaaagttaacacaatcttcttcagtaga
gtggcagacacctcatttgacattccagaggcaaatgtcttgattgagatctcttctcag
ggtggatctcgtcgtcaagaagctcagaggttaggtcgtattctgagagcgaaaaagggt
gccatcgcagaaaatttcaatgccttcttttatgccctcctctctcaggacacacgagaa
atgggttactcacgcaagaggcagagtttcctcatcaaccagggttatgcataccaagtg
attactccagcccagatggtgggcatgaacgaggaacagcttcactatgccactcgagaa
gataaattacagctcatcgaacaaatcctggctgcatctgatgcagatttgttcgaagaa
ggtgttactggtgagcgtggagttggttctcagcgccggatgggcaacatgggatctatg
tcaggtgctgatgactctatttacggcgaaaggagaaagggatcaaagaaagaccaccaa
cattacctcttcaaaaaattcaggtcataa
DBGET
integrated database retrieval system
