Homarus americanus (American lobster): 121861659
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Entry
121861659 CDS
T07477
Name
(RefSeq) exosome component 10-like
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
hame
Homarus americanus (American lobster)
Pathway
hame03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hame00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121861659
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hame03019
]
121861659
Messenger RNA biogenesis [BR:
hame03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
121861659
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
121861659
NCBI-ProteinID:
XP_042215487
LinkDB
All DBs
Position
Unknown
AA seq
864 aa
AA seq
DB search
MDSNIPNGSPPFIGNRTLTEYVKRVMTSVQGCQKVSAELQGWHHYRDYAGVHRTMEQVNA
SITSLISNIFSHQDIKLGLSHHKLLDQFDMIREGNDALLERINSDIDEASGLKKNADAEV
QDPVVKKVQGPSMNSAVGKNVVLLASRNVQKPQLFFTEKIDNSFKEPFIPMITEKPNSIK
PLSILICLDNSGREYYSHPYEYELHHWNPDPSQLTPVVPTPPKPIGDTSLVMVDTEHDLQ
NLVAELGKYKEIAVDVEHHGFRSYLGLTCLIQISTRDKDYIVDPLLLRGKLTILNEVFTN
PKITKVVHGADYDILWLQRDCGIYVVNLFDTHQAAVVLEYPHRSLAALLSRFCQIQANKV
YQRADWRIRPLPNDFIEYARQDSHYLLYIYDIMRNELIERGNQLNNLISAVYSRSAEICM
KRYEKPIVGPDSHMDLYRRSRKTFNSRQMFALRELYLWRDRVAREQDESPEFVLPKHMLL
QITEVLPKEMQGVLACCNPIPPLVKTELLTLHTIIREAREQPLIDIKLNPLQEHLPVGVM
PSSEDLHMNFICKHDLSHCEENPTDLPTLLNPRETLLGDLFLQNIVDISLKDQSQLFGHI
KIEKWHKGQEYSEMTDKFMSPYERYTSYVEMKPLLDGEKKKKEGELTDLDRVNRVRQHFL
SLSDNTEVTTKENIRVATNHTVDGETQVVAEGSLLQFSEDSSQQHQQLDETDKAESEQQS
ETVNKTKKHSGPSKSVILSEEIRESKTKNKSIKRKSSEKYEKSTKKVKKTDEGEEVVECS
GLEEGEVDESTGPDENNGNEQNPEEAFDYEIADYTIFQKPHNKGYSKRRQIKERFKGKSH
KGRGGKSSMKSFTWGGSDSHRGSR
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atggactctaatataccaaatggtagtcctccatttataggaaataggactttaactgaa
tatgtgaagagagttatgactagtgttcaaggatgtcagaaagtgagtgcagaacttcag
ggttggcaccattaccgggactatgcaggggttcatcgtacaatggagcaggttaatgct
agcattacatcattaattagcaacatcttcagtcatcaggacatcaagttggggctgtct
catcacaaactacttgaccagtttgacatgatcagggaaggcaatgatgccttgctggag
agaattaattctgacatagatgaagcttctggactgaagaagaatgctgatgctgaagta
caggatcctgttgtgaaaaaagttcagggaccatctatgaacagtgctgttggaaagaat
gtggttctgctggcatctcgtaatgtacaaaagccccagctgttttttacagaaaagatt
gataattcatttaaagaaccattcatacccatgatcactgagaaacccaattccatcaag
cctctgtcaatcctaatctgccttgataacagtggccgagagtattactctcatccctat
gagtatgagcttcatcattggaatccagatccttcacaactgaccccagttgtccccact
ccccccaagcccataggtgacacatctctggttatggtagacacagaacatgacttacaa
aatctggttgcagagcttggtaaatacaaagaaattgctgttgatgtagagcaccatgga
tttcggtcatatctaggacttacctgcctgatccagatatccactagggataaggattat
attgtggacccactgttactcagaggaaaacttacaatattaaatgaagtcttcacaaac
cccaaaattacaaaggtggttcatggtgctgattatgacatcttgtggctacaaagagac
tgtgggatatatgtagttaacctctttgacactcaccaagcagcagttgtacttgaatat
cctcaccgttcattagctgcccttctatcacgcttctgtcagatccaggccaataaagtt
tatcagagggcagactggagaataagacctctcccaaatgactttattgaatatgcaaga
caagattcacattacttgttatacatatatgacatcatgcgtaatgagcttattgaacga
ggcaaccaactcaacaatttgatttctgctgtttacagtcgttctgcagagatctgcatg
aagcgttatgagaaaccaattgtgggaccggatagtcacatggatttgtatcgccgcagt
cgtaaaacttttaactcaaggcagatgtttgctttgcgtgaactttatctgtggcgtgac
agagttgctcgtgaacaggatgaaagtcccgagttcgtgttgccaaagcatatgctgctg
caaataacagaggtattacctaaggagatgcaaggtgtgttggcttgttgcaaccccatc
cctccattggtcaagactgagctcctcactctacacacaattattagggaagctcgggag
caacctctcattgatattaaactcaatcctttacaagaacatcttcctgttggagtaatg
ccatcatcagaggatctacatatgaactttatctgcaaacatgatctttctcattgtgaa
gaaaatccaacagacctccctactctcctcaatcctagagaaactttgcttggagatctt
tttttacaaaacattgttgatatctctctcaaggatcagtcacagttgtttggacacata
aagattgaaaaatggcacaagggacaagaatattcagaaatgacagacaaattcatgagt
ccatatgaaaggtacacatcctatgtagagatgaagccactcctagatggagagaagaaa
aagaaggagggagagctcacagatcttgatcgggttaatagggttagacaacacttcttg
tcactctcagataacactgaagttactactaaagaaaacattagagtggcaaccaatcac
acggttgatggtgaaacacaagttgttgcagaaggttccttgctgcaatttagtgaagac
agttcacagcagcatcaacagttggatgaaacagataaagcagagagtgaacagcaatca
gaaacagtaaacaaaacaaagaaacattctggtccttccaaatcagttattttaagtgaa
gagatacgtgaaagtaaaaccaagaacaaatcaataaaaaggaaatcaagtgaaaaatat
gaaaaatcaacaaagaaagtgaaaaaaactgatgaaggtgaagaagtagtggaatgctct
ggactagaggagggagaggtagatgaaagtacaggtcctgatgaaaataatggcaatgaa
cagaatcctgaggaagcttttgattatgagattgctgattatactattttccaaaaacct
cataacaaaggttatagcaaaagacgacagatcaaggagagattcaaaggaaagagtcat
aaaggacggggtggaaaatccagtatgaagagtttcacttggggtggcagtgatagtcac
agagggagccggtag
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