KEGG   Homarus americanus (American lobster): 121862262
Entry
121862262         CDS       T07477                                 
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like isoform X1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
hame  Homarus americanus (American lobster)
Pathway
hame04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:hame00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    121862262
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:hame04121]
    121862262
Enzymes [BR:hame01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     121862262
Ubiquitin system [BR:hame04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    121862262
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     121862262
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40 Beta-prop_IFT122_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_EIPR1 Beta-prop_WDR3_2nd Beta-prop_RIG_2nd EIF3I Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd WDR55 WD40_Gbeta Beta-prop_WDR36-Utp21_1st zf-C3HC4_2 Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR19_1st zf-C3HC4 Beta-prop_EML ANAPC4_WD40 Beta-prop_NOL10_N Beta-prop_WDR90_POC16_2nd Beta-prop_HPS5 Beta-prop_WDR35_TULP_N zf-RING_UBOX WD40_like DSE1_N ASA1 PEP5_VPS11_N zf-RING_2 Beta-prop_DCAF4 zf-C3HC4_4 zf-C3HC4_3 Beta-prop_WDR41 Beta-prop_DCAF12 Beta-prop_Aladin Beta-prop_Vps41 Beta-prop_IFT140_1st WD40_RFWD3 WDR90_beta-prop_4th Beta-prop_IFT122_2nd zf-RING_5 Beta-prop_WDR75_1st RING_XB3-XBAT31 Rtf2 zf-RING_10 DUF5803 HIP1_clath_bdg HCR
Other DBs
NCBI-GeneID: 121862262
NCBI-ProteinID: XP_042216302
LinkDB
Position
Unknown
AA seq 650 aa
MASSETRLEGSNSRVTGRGVKRTHPIVLNGLDGTTEEKNSDYLCPVCLDLISEAHMTKCG
HTFCRGCLFNSIESNKRCPKCNFSVESTDHIFPNHTVNQQILKQRRAADLQAAFSKKNKT
AALSELRNYLSFDSSCLGVSDITHIITILQEKKEQLEAASMQNKFELMKDFLSELRKKKE
EQLSTVSRELKLITHDLSSVQNNLESVLPYRTSNSCVPQSNSVPNTTGVFLTEILGTDCP
GTSNGSQESPSPTEEGFNVPLFSRACPENSTVQARRKRMHFHFDELEERYFSMRVPGFSD
SGMDDDDDDGLDQFGECISKFTHYSGMRPLATISYNCDMFHQSSNIASSIEFDKDSEYFA
VAGLTKKIRIFDYGTVIRDTVDLHYPCSEMLCTSKISCVSWSNYMKHMLASSDYDGVVTV
WDAFTAQRLHVFQEHEKRCWNVDFNKMDTKLIASGSDDHKVKLWSLDCERSMTCLEAKAN
VCCVQFNPSSRYHLAFGSADHCVHYYDLRNMKEAVRVFKGHRKAVSYVKFVSSEDIVSAS
TDSLLKIWNVNKSHCVRSLQGHINEKNFVGLATDGEYVACGSENNSLYVYYKGLSKKLFS
LKFDQKKWVLDPEQKEEESSEFVSAVCWRKGSNIIAAGNSKGIIKILQMV
NT seq 1953 nt   +upstreamnt  +downstreamnt
atggcatcaagtgaaactcgattggaaggctccaactcacgtgtgactggtcggggagtc
aagcgtacccatcccattgtcctaaatggcttggatggtacaacagaagagaagaactct
gactatttgtgtcctgtgtgcttggacctcatatcagaggcccacatgacaaaatgtggg
catactttttgccgtgggtgtctgtttaatagtatagaatctaataaacgatgccctaag
tgtaattttagtgttgaaagtacagatcacatatttcccaatcatactgtaaaccagcag
atactaaaacagcgtcgggcggctgacttacaggctgccttttcaaaaaaaaacaagacc
gctgctcttagtgaactccggaattaccttagttttgattcctcttgtctaggtgtcagt
gatattacacacataataactatcttacaggagaagaaggagcagttggaagctgcatca
atgcaaaacaagtttgagctcatgaaggacttcctatcagagttacgtaagaagaaggaa
gagcagttgtccaccgttagtagagaactaaaactcataacacatgacctatctagtgtg
caaaataatcttgaaagtgttttaccatatagaacttcaaatagctgtgtacctcagagt
aacagtgtcccaaatactactggtgtgttccttactgaaattcttggcactgactgtcct
ggaacatcaaatggatcccaggagagtccaagtccaacagaagaaggatttaatgttcct
ttgttctctcgagcttgtcctgaaaattccacagttcaagcgagacgaaagagaatgcac
ttccactttgatgagttggaggagcgttattttagtatgcgggtgccgggcttcagtgac
tcgggaatggatgatgatgatgatgatggtcttgaccagtttggggagtgtatatcaaaa
ttcacccattacagtgggatgcgtcccttagcaacaatcagctacaattgtgatatgttt
catcagtccagcaatattgcctccagtatagaatttgacaaggacagtgaatactttgct
gtagcgggtcttaccaaaaagattcgcatttttgactacggcacagtgatcagagatacg
gtggatttgcattacccgtgttctgaaatgctctgcacatcaaaaattagctgtgtgagc
tggagtaattacatgaagcatatgctggcgagtagtgactatgacggtgtagtgacagtg
tgggatgctttcaccgctcagaggcttcatgttttccaagagcacgaaaaacggtgttgg
aatgtggactttaacaaaatggataccaaactaattgcctctggcagtgatgatcacaaa
gtgaagctttggtctttagactgtgagaggtctatgacgtgcctagaagctaaagcaaat
gtgtgttgtgtgcagtttaatccatctagtagatatcatttagcatttgggtcagctgat
cactgtgttcattactacgatttacggaatatgaaggaagcagttagagtgtttaagggt
caccgtaaagctgtgtcgtatgttaaatttgtgtcaagcgaagatattgtttcggcctct
acagacagtttgttaaaaatatggaatgttaataagtctcactgtgtgcgttcactgcag
ggacatataaatgagaaaaattttgttggtttggcaaccgacggggaatatgtggcctgt
ggctcggaaaataattctctgtacgtgtactataagggtctatccaagaaattgttcagc
ttgaaatttgatcagaagaagtgggtattagacccagaacaaaaggaggaggaatcctct
gaatttgtgtctgctgtttgttggaggaaaggttccaatatcatagctgcaggaaacagt
aaaggcattatcaaaatcttgcagatggtctag

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