Homarus americanus (American lobster): 121862372
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Entry
121862372 CDS
T07477
Name
(RefSeq) ATP-dependent RNA helicase DDX42-like isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
hame
Homarus americanus (American lobster)
Pathway
hame03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hame00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121862372
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hame03041
]
121862372
Enzymes [BR:
hame01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121862372
Spliceosome [BR:
hame03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
121862372
Complex B
121862372
Complex C
U2 SnRNP specific factors
121862372
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
Yopt
DUF460
Motif
Other DBs
NCBI-GeneID:
121862372
NCBI-ProteinID:
XP_042216560
LinkDB
All DBs
Position
Unknown
AA seq
787 aa
AA seq
DB search
MSLPLIFKIIVFFSVVDRHSWCCRQNCKQRLIVLRPSWATMSYNRGRGFGFGGFSFARKQ
EAIPPPPNATLSKHGYHTMTAISQNAISGGCGYGQPRKRPRDEDEYFDDEDESFEGAYQP
APGSPGPQRKDSSDSDEDPLDAFMAGIEQEVKRTKGKGAGEKKEMKGVRDDIDEEDDEES
YYRYIQENPNAGRQQEDSEDEIEYDEDGNPIAPKKPKYIDPLPPIEHITIEYSDFTKNFY
QEHEDIAALTPTQVHDLRVKLGIKVTGFDAPKPVTSFGHFGFDEALMKAIRKSEYTQPTP
IQSQSVPIALSGRDAIGIAKTGSGKTAAFIWPMLVHIMDQRELAPEEGPIGLILAPTREL
AQQIYTEARRFGKVYNIQVVCAYGGGSKWEQSKALEAGAEIVVATPGRMIDMIKMKATNL
QRVTFLILDEADRMFDMGFEPQVRSICDHVRPDRQTLLFSATFKRKVERLARDVLTDPVR
VVQGELGEANQDVTQIIRLLSSSGHKWSWLVQYLVEFMSAGSVLIFVTKKANAEELSKNL
VTKEFEALLLHGDMSQFERNEVITAFKKKDKPILVATDVAARGLDIPHIRTVINYDVARD
IDTHTHRIGRTGRAGEKGTAYTLVTDKDKEFAGHLVRNLEGAAQEVPSELLELALQSSWF
RKSRFKQGKAKALGGRGLGFRERPGLGCTPISESTAGSGGGCVGGGGVGGVGASMAVGPA
SQAYGGGDPSMTGPATNRLAAMKAAFHSQYKNQFTAASADTSWTLGDAKAVQLAPPRDRK
RKSRWDD
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgtcattacctttaattttcaagattattgtattcttctcggtggttgatcggcatagt
tggtgctgtcgacaaaattgtaaacaacgattgattgtgctgcggccgagttgggcaaca
atgagctacaacagaggccgaggttttggttttggagggttttcgtttgcgaggaaacaa
gaagcaatcccacctccacctaatgccaccctaagcaaacatggctaccacacaatgaca
gccattagccagaatgcaatttctggaggttgtggttatggtcagcctcgcaagagacct
agggatgaggatgagtattttgatgatgaggacgagagcttcgaaggagcataccagcct
gccccaggtagtcctggaccccagagaaaagattcttcagactctgatgaggatccactg
gatgccttcatggctggaattgaacaggaggtaaaaaggacaaagggtaaaggtgcagga
gagaaaaaagaaatgaaaggagttcgagatgacatagatgaggaggacgatgaagagtct
tactacagatacatacaagaaaaccccaatgctggcaggcaacaagaggatagcgaagat
gaaattgaatatgatgaggatggaaaccctattgctcctaagaagccgaagtacatagat
ccgctgccacccattgaacacattaccattgaatattcagattttaccaaaaacttctat
caagagcatgaggatattgctgctctcacgcccactcaagttcatgatctgagagtcaaa
ctagggattaaggttacaggttttgatgcccctaaacccgtaacaagttttgggcacttt
ggttttgatgaggccctaatgaaagccatccgtaaatcagaatacacccaacccacaccc
attcagtcccagtcagttccaattgcattaagtggacgggatgccattggaattgcaaaa
acaggcagtggtaagacagcagcttttatctggccgatgttggttcatattatggaccaa
agagaactagctccagaagaaggaccaattggtctcatcttagcgcctacccgtgagctg
gcacagcaaatttatacagaggcacgaagatttggcaaggtttataacatacaggttgtg
tgtgcttatggtggtggcagcaaatgggaacagagtaaagcactagaagcaggagcagaa
attgttgtagccacacctggtcgaatgattgatatgattaagatgaaagccacgaatctc
cagcgtgtgacattcctgattcttgacgaggcggatcgcatgtttgatatgggttttgaa
cctcaagtaaggtctatatgtgaccatgttcggccagatcgtcaaactctcctcttctca
gccactttcaagagaaaagttgagagactggctagagatgtcttgacagaccctgtccgt
gtagtacaaggagaacttggagaagcaaaccaggatgtaacacagattattcggcttttg
agttcaagtggtcataaatggtcttggctcgttcagtaccttgtagaatttatgtctgct
ggcagtgtgttaatatttgttactaagaaagctaatgctgaggaattaagcaaaaatctg
gtgaccaaagaatttgaagctctgctcctgcatggtgatatgagtcagtttgagagaaat
gaagttataactgcatttaaaaaaaaagataagccaattttggttgcaactgatgtagca
gcacgaggtctagacatcccccatatcagaactgttattaactatgatgtagccagagac
atagacactcacacgcatcgaattggtcgtacaggtcgagctggtgagaagggtacggca
tacacactggtaacagataaggataaggagtttgcaggacatttggtacggaaccttgaa
ggagctgcgcaggaagtaccgtctgaactattggaactagccttgcagagctcttggttc
cgtaagtctcgatttaagcaaggtaaagcgaaggctcttgggggacgaggattaggcttc
agagaacgtccaggactaggctgtactccaatcagtgaatccacagcaggtagtggtggt
ggttgtgttggtggtggaggtgttgggggtgttggtgctagtatggcagtaggcccagcg
agtcaggcctatggaggtggagaccccagcatgaccggcccagctactaatcgtcttgct
gccatgaaagctgcgtttcattcacagtacaagaatcagtttactgcagccagtgctgac
acttcatggactttaggtgatgctaaggctgttcagctcgctccaccacgggaccgcaag
agaaagtccagatgggatgactaa
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