Homarus americanus (American lobster): 121862431
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Entry
121862431 CDS
T07477
Name
(RefSeq) nucleoporin NUP188-like
KO
K14311
nuclear pore complex protein Nup188
Organism
hame
Homarus americanus (American lobster)
Pathway
hame03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
hame00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121862431
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hame03019
]
121862431
Messenger RNA biogenesis [BR:
hame03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121862431
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Microp_apicomplexa_32
Motif
Other DBs
NCBI-GeneID:
121862431
NCBI-ProteinID:
XP_042216661
LinkDB
All DBs
Position
Unknown
AA seq
1622 aa
AA seq
DB search
MEPVEVVSGKALWGVICGTYVLPSDEVVGAELQLAAPHLRVGLAAYKKPTDNHYKTWADT
AEATQAEKDFVKKLSQLLDLAAVHSWEVFQLFLLHEYRGAEASLVEVLASQRDEETFLAQ
LWSFYLSDRLHLLRCLRHIVANTANRQHPYQSLFGDFMQDVLDKDGTLGESLVQQVLLCT
RMVSPTPQTHGPHLPSHGPHTWLAHHLAELREVLATLLVYYGSTTRSPTPDTFKKLVQLA
QGGGLAGRSEIQEGLRDSHGPLVEALDATHMLLLILAINADSPTSGHNLCDSGWVSKLDP
IMAGLGARTPHLAPLLAWAVLQLRTSGGTSSGHPKIYHKLAQRALHGNVFGYLQTALNNT
AIKGDELLLRLGSSVVYSLVCAAAGSLDLDRVDYLPVLNSLAKNCLAHDPPAHLFWSEEG
GGAGLLLPQALQVFPHDVEPLLSLTTALALANPESCHKVVELLSELPSITWVVPEAESQN
IQIRLSDCYTTGPLHLMPTVTVATHTRGMLISTEPLVVMWQMETNAWQGLLAIMKLLDNE
VGGGASLLDPRLITAVSATMRLLSSVLTTVPTQLPALIHFVHQTVGLLHKVSQVTRPPGA
LVAALLEFLAEVATQDAKQVWAELEGSPLLPFLASSQNTVGVKRGKGDPFLGYRAGGLRA
LVCGEEAAMGKYPILCSYTRLLTAAIKGGVSSGCVRGGVVFMAREVTGALLRWCYSNQEE
REIVLDHCLALLHHTLEASKMDTSVRDLVVRQLVDRSSAGQTLLSVVVSGASLESALNHP
THSPISTHAHRLTRTAQMALSILHRLVGEDSSMGGLSQLLRAAPSLGVTLGGGGRSLGSS
SPPHLALTVALYAHQRLNPRLSYLALRTLTRFAQKLDVPLVACFGSEADGIRDALLRRLD
SATEDVRVKVALLRLLTASTTRQQGLTNAFLTPPEKLLDPLTSLANPSTRNESGRELALA
VVELLDALWSEKYTTATVYLQDKEDFWKALIHPITTGKPGEVSDAVVGHSLKVVARQVFS
SNTKPSASLRSAMDQLCNPDTGAICQWSKHIVMSLESGSSSNKDVSELLLPAWRDFVVVL
VARAKSWLSSDQKVNLASDILHALLHQLELDTVDETLTILLAELYLSLVKHCGKQLAEKA
DIYIRIGKLLVMVQEAVMSTPTHCQLLILGAALRMVTLTEVSHQSQGQVLSLLSPVVGLI
QQHGRLAGSEGHSCTSASTLGVATSLLHQCLLRCPVDTAQLHLTHSNVIPALLNATEIYM
KIGEEEVVGELLRLLATLSRISQLSEEFCSQSISSTLVIPPSKTDLLSEVVWGVVWGVHH
EGVGGVEGSVNVAAVHLSALCGSLAAPHRQPGLALATAALVTALAPHASLWIVLHPASHS
QLTAATTRCINLTTHLLCTPRVVQMELSGERTSSSVTSDSSATTTTISPNTTAVLDQMLK
VLCACLGAIRSLGPDLTDLLCGPGIDVAAWTLFFHPSFRPVSAHDPSAQPSLASLTSVLD
LYDSHASKESRGVSPCRGGAPEVGLSVRVLATSAEQALLLLLTQSTLALMSAETSPRDAL
RVRHGLADEMNSFFMRWLGRRPAVSPLPSTSTAVPGVSSSVHIDLTYLRLAQQLVGRLCA
TK
NT seq
4869 nt
NT seq
+upstream
nt +downstream
nt
atggaacctgtagaagttgtcagtggtaaagctctgtggggagttatatgtggcacctat
gttttaccatcggatgaagtggttggtgcagagctacagttagctgccccacacttgagg
gttggtttggcagcatataaaaaacccactgataaccattataaaacatgggcagacaca
gcagaagccacacaggcagaaaaggattttgtaaagaagctctcacagttgctggattta
gctgcagtccatagctgggaagtgtttcagctgttcttactacatgagtatcgaggtgca
gaagcctccttagtggaggtcttggccagccagcgtgacgaggaaacttttctggctcag
ctctggagtttttatctcagtgatcgcttacatcttctccgctgcctgagacacattgtt
gcaaatacagcaaaccgacaacatccttaccagagtttgtttggtgacttcatgcaggat
gtcctggacaaggatggtactcttggggagagtctagtgcagcaagtattactgtgtacc
agaatggtttccccaacccctcagactcatggcccacatttgccctctcatggccctcat
acatggctggcccaccacctggcagaactgcgagaagtactggccactctccttgtatac
tatggcagcaccactcgctctcctactcctgacacatttaagaaacttgttcagctggca
cagggaggaggactggctgggcggtcagagattcaagagggtttgcgggacagccatggc
cccttagtggaggcccttgatgctacacatatgcttctacttatccttgccattaatgct
gattctcctacaagtggtcacaacctatgtgatagcggatgggtaagcaaattagatccc
atcatggctgggcttggtgcccgaacacctcaccttgctccattactagcctgggctgtg
ctgcagttacgaacaagtggtgggacatcctcaggccaccctaaaatataccataagctt
gcccagcgtgctttacatgggaatgtctttggctatcttcaaacagccctgaataatact
gctattaagggagatgaattacttctacgtcttggatcatctgttgtgtattccttggtg
tgtgcagctgctggctccttggatttggacagggtagactatttaccagtcttaaattct
ctagccaagaactgcctcgcacacgacccccctgcacatctcttttggtctgaagaaggt
ggaggagctggtctgctgttaccgcaggcattacaagtattcccacatgacgttgaaccc
ttattatctctcactacggctctggctctggcaaaccctgagagttgtcataaggtggtg
gaacttctcagtgaacttccatctatcacttgggttgttcctgaagccgagtctcaaaat
atacagatacggttaagtgattgttatactacaggtcctctacacttgatgccaacagtg
acagtagcaacacatacacgtggaatgttgatttcaactgaaccattggttgtgatgtgg
cagatggaaacaaatgcctggcagggactccttgctatcatgaagctgcttgacaatgag
gtgggtggtggagcaagtctgttggaccccagacttataacagcagtgtccgccaccatg
cgccttctctcttctgtgttaactactgtgcccactcaactgccagccctcattcacttt
gttcatcaaactgttggattacttcacaaagtgtcacaggtgacccgaccccctggagca
ctggtagcagcactgctggagttcctggcagaggttgccactcaggatgcaaaacaggtg
tgggcagaacttgaaggcagcccactactgcccttcttagcttcttcacagaatacagtt
ggagtcaagagaggcaagggggacccattcctcggatatcgtgcaggaggcctccgtgcc
ttggtctgtggagaggaagcagccatgggcaaatatcccatactctgttcttatactcgc
ttactaactgcagccatcaagggaggtgttagcagtggttgtgtaaggggtggcgttgta
tttatggccagagaggtaacaggagctctgctgcgctggtgttacagcaaccaggaggag
agggagattgtgcttgaccactgcctagcccttctacaccatacactggaagcttccaag
atggacaccagtgttcgtgatctagtagtgaggcagcttgtagacagaagcagtgctggt
cagacactgctgtcagtggttgtgagtggggcaagtttagagtcggcattaaaccaccca
acacactcccccatatctacccacgctcacagactcacacgtacggcccagatggctctt
tccattctccacaggttagtaggtgaagacagcagtatgggaggcctaagtcagcttctt
cgtgctgcaccgtccctgggagtgacgctgggtggtggaggacgctcacttggcagtagc
agtcctccacacttggcgttaactgtggctctatatgcccatcagcggctcaaccctcga
ctctcctacttggctcttcgcactcttacacggtttgcccagaaacttgatgtacctttg
gtggcatgttttggaagtgaagccgatgggattcgagatgcactcttacgacgcttagac
tcggcaacagaagatgtacgagtgaaggtcgctctgttacgtctcttaacggcttctaca
acccgccagcagggtcttacaaatgctttcctcaccccacctgaaaaactactggaccct
cttacttctcttgcaaatccatcaacaagaaatgaatctggacgagaacttgccttggca
gtagtagaacttttggatgccttatggagtgagaaatacactacagccacagtatacctc
caagataaagaagatttctggaaggctttgattcatcccatcaccactggtaagccaggt
gaagttagtgacgctgtagtgggtcactccctcaaagtcgttgctcgacaagtgttctcc
agtaatactaaaccctcggcttcactcagatcagccatggatcagctgtgtaatcctgat
acaggtgccatctgtcagtggtctaagcacattgtaatgagccttgaaagtggatccagc
tccaacaaagatgtgagtgagttattgttaccagcatggcgtgacttcgtggtggtgcta
gtggcccgagccaagtcttggctgagcagtgaccagaaggtgaacctggcaagtgatata
cttcatgccttgctgcaccagcttgaactggatacagtagatgaaacattaaccatccta
ttggctgaactatacttgtctctggttaaacattgtggaaagcagttagcagagaaggca
gacatatatatcagaatagggaagctgttagtgatggtgcaagaggctgttatgtctaca
ccaactcactgtcaactcttgatcttgggtgctgcactaaggatggttactctcactgag
gtctctcaccagtcacaaggtcaagttttgtcattactgagcccagtggtgggtcttata
cagcagcacggtaggctggctggctcagagggtcacagttgtacctctgcatccaccctg
ggtgttgctacatccctcctacatcagtgtctcttgcgctgtcctgttgacaccgcccag
ctgcacctcactcactcaaatgtcatacctgcacttctaaatgccaccgagatctacatg
aagattggtgaagaagaagtagttggggagttgctacgccttctggccacactgtctcgc
atctctcaactgtccgaggaattttgctctcagtcaatatcatcaacacttgtcatacca
ccatcaaaaactgatctgcttagtgaagttgtttggggtgttgtatggggtgtgcaccat
gagggtgtaggaggtgtggaaggcagtgtgaatgtggctgctgtccacctgtcagcactg
tgtgggtccctggcagctcctcatcgacagccgggtcttgccctagcaacagctgccctc
gtaacagcacttgctcctcatgcctcgctgtggattgttctgcacccagcatcacactct
cagctgacagcggccactacacgatgtatcaacttaactacacacttgctctgcacgccc
agggtagtacagatggagctgagtggtgagaggaccagtagtagcgttacatctgattct
tctgctacaacaacaactatttctcccaacacaactgctgtcctcgaccaaatgttgaaa
gtactgtgcgcatgtcttggtgccatccggtctttaggtcctgatttaactgaccttttg
tgtgggccgggcatagatgtggcagcttggacccttttcttccatccatctttccgtcca
gtgtctgctcatgacccaagtgctcagcctagtttggcttctctgacatctgttcttgat
ctctatgatagtcatgcatccaaggaaagtcgtggagtatcaccatgtcgtggcggtgcg
ccagaagttggcttaagtgtgagagtattagccacttctgcagaacaagccttgttgctg
cttctaacacagtctaccttggcactaatgagtgctgaaacttctccacgtgatgctcta
cgtgttcgccatggactggctgatgagatgaattcattcttcatgagatggttgggtcga
cgaccagcagtttcacctctaccatcaaccagcacagctgtgcctggagtcagcagttcg
gttcatattgatttaacatacttacgccttgcccagcaacttgtaggaagattgtgtgcc
actaaatga
DBGET
integrated database retrieval system