Homarus americanus (American lobster): 121863241
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Entry
121863241 CDS
T07477
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hame
Homarus americanus (American lobster)
Brite
KEGG Orthology (KO) [BR:
hame00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hame03016
]
121863241
Enzymes [BR:
hame01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
121863241
Transfer RNA biogenesis [BR:
hame03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
121863241
Prokaryotic type
tRNA splicing ligases
121863241
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
ACP_syn_III_C
Motif
Other DBs
NCBI-GeneID:
121863241
NCBI-ProteinID:
XP_042217685
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MVVRQYNEELKFLERLSPQCWRIKKGFQPNMNVEGIFYVNDHLEKLMFDELRNACRPGSI
GGFLPGMKQIANVAALPGIVGKSVGLPDVHSGYGFAIGNMAAFDMDNPKAVVSPGGVGFD
INCGVRLLRTNLTEADVLPIKEQLAQSMFDHIPVGVGSKGIIPMTARDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMAQADPAKVSMRAKKRGLPQLGTLGAGNHYAEIQVVEEIYD
KWAACKMGIEEKGQVCVMIHSGSRGFGHQVATDALVAMEKAMKRDDIETNDRQLACARIK
SKEGQDYLKSMAAAANFAWVNRSSMTFLSRQAFAKQFRMSPDDLDMHVIYDVSHNIAKIE
QHWIDGKLRTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
METFGSTCHGAGRALSRAKSRRNLDYSDVLIKLQEQGISIRVASPKLVMEEAPESYKNVT
DVVDTCHAAGISKKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgtccgacagtataatgaagagcttaaattcttggaacgtttgtcacctcaatgt
tggcgcatcaagaagggtttccaacctaatatgaatgtggagggcatattctatgtgaat
gatcaccttgaaaagttaatgtttgacgagttacggaatgcttgccgtcctgggtcaatt
ggaggctttttacctggtatgaagcagattgctaatgttgctgcacttcctggcattgtt
ggaaaatctgttggtctaccagatgtccactcgggatatggttttgcaattggtaatatg
gcagcctttgacatggataatcctaaggcagttgtgtccccgggtggtgttggatttgac
atcaattgtggagtccggttattgcgcaccaaccttactgaagctgatgttcttccgatt
aaggagcagttagcccagtccatgtttgaccacatccctgttggtgttggatcaaagggg
atcatccctatgacagctcgtgatttagaggaagcacttgagatgggcatggattggtca
cttagagaaggatatatctgggcagaagataaggagcattgtgaggagtatggacgtatg
gcacaagcagacccagccaaagtttccatgcgggcaaagaagaggggtttgccccagctg
ggcacactgggagcaggaaaccactatgcagaaattcaagtggtggaagaaatttatgac
aaatgggcagcctgcaaaatgggaattgaagaaaaagggcaagtgtgtgtcatgattcac
tctggatctcggggttttggacatcaggttgctacagatgctcttgttgcaatggagaaa
gcaatgaagagagatgatattgaaactaatgatcgacagttagcttgtgctcggatcaag
tctaaagaaggacaagattacctgaaatccatggctgcagccgcaaattttgcatgggtt
aaccgctcctccatgaccttcttaagtcgacaagctttcgccaagcagttcagaatgagt
cctgatgacctagacatgcacgtaatctacgatgtctctcacaatattgccaagatagaa
caacactggatagatgggaaactgcgtacattattggttcatagaaagggttcaactcga
gccttcccaccacaccaccccttgatccctgttgattatcaactgacaggacagcctgtc
ctaattggtggaaccatgggtacatgctcttatgtattaactggaactgagcagggaatg
atggagacctttggatcaacatgccatggtgccggccgtgctctctcccgtgccaagtct
cgcagaaatctagattacagtgatgtcctcattaagctccaagaacagggtatcagcatt
agagtggcatctccaaaattagtaatggaagaagctccagagtcttacaagaatgttact
gatgttgttgatacttgtcatgcagctggaatcagcaagaaatgcattaaacttcgacca
atagcagtcatcaagggatga
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