Homarus americanus (American lobster): 121865327
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Entry
121865327 CDS
T07477
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent DNA/RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
hame
Homarus americanus (American lobster)
Pathway
hame03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hame00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121865327
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hame03019
]
121865327
03012 Translation factors [BR:
hame03012
]
121865327
Enzymes [BR:
hame01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121865327
Messenger RNA biogenesis [BR:
hame03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
121865327
Translation factors [BR:
hame03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
121865327
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
DEAD
Helicase_C
HA2_C
AAA_22
nSTAND3
ATPase
AAA_19
AAA_14
NPHP3_N
NB-ARC
ABC_tran
TsaE
NACHT
PhoH
AAA_16
Motif
Other DBs
NCBI-GeneID:
121865327
NCBI-ProteinID:
XP_042220600
LinkDB
All DBs
Position
Unknown
AA seq
1062 aa
AA seq
DB search
MYGQRGNAYQNSGDRGGGGWRRGRGRGGWRGGKGRGEGGGGGEEGRGRGRGSRRGGRPPG
LKGKEIGLWYARRGSERREREEQNLPSISMNDNQLRDVGRILDSFDGGNNLARSAPKMEG
AGSAIQYTDDLSQEWDQRISSIIKLEFDNGVKIEAGCSNNDIDEIDHFSNPYAWMQDNKQ
KRKGTSANVPIPGEDNEKRSRGDTFTQRLENISESDFKQAYMANVFGNLKRDAGGLHALK
GKQIGLPRIEVMDNRLYEDMLEQQNSKAYQEMLKVRKRLPSYKMKDEIIDTIQENQVVVL
SGETGCGKTTQVAQFILEDAIADGHGSTCHIVCTQPRRISAISVAQRVADERGEKLGKSI
GYQIRLEAVKPRAEGSIIYCTTGIVLQWLQGDPLLSQVSHLILDEIHERDMLSDFLICIA
KDLIKVRPDLKVVLMSATLNAELFSEYYGNCPMLHIPGFTFPVKEYYLEDVIELTRFKFD
DEKIPVWRRRDHKKNQEFEDMIAPYIRNLEQNQKYSSQTLDELYKKTSEELNTDLILELL
RHIARQPMGAVLVFLPGWDKISRVHSLIQNDRMLSGRNYLVIPLHSMMPTVNQREVFNRP
PEGVRKIVLATNIAETSITIDDIVYVIDGGWIKMKNYDKEANVTTLRPEWVTIANARQRR
GRAGRVQDGVCYHLFTRARKLTLDDYPLPEIQRTRLEEIILHIKIMLLGSVRPFLSKVMM
PPDPSVVDVSLQMLRAINALDGGESASGLPSALPIDPLTGRMLLXAIFSCVGPILTVAAS
LSFKDPFIIPLGKERAVDEVKRKLSGGNKSDHLLLVTVYEEWERACQHHDDKHYCWDKFL
SSAVFHQLKNMRKQFMGLLYENKFVNTKDPSEGEANRNSKNIPLVRAIITAGLYPNVARV
LSDNGRPSPYKPLKIQTAQERRVSLHPKSVNDKERDFEYPWLIYREKIKSSKVFIHDCSM
VPNYPLLFFGEKLNYDHTKGVINVDGFVRVRSSQHVAHLVQNLRNELDRLLEYKISHPGM
TQWGRSNKEGALLQTIVDLITSEKKTSQDYQDYVADQDDDEN
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atgtatgggcagcgaggcaatgcctaccaaaatagtggtgatagaggtggaggaggctgg
cgacgaggaagaggcagaggaggctggcgaggaggaaaaggcagaggagaagggggagga
ggtggagaggaaggaaggggaaggggaagaggaagtcgtagaggtggacgaccaccagga
cttaagggcaaagaaattggtctctggtacgctagacgaggtagtgaacgtcgggaaagg
gaagagcaaaatttaccatcaatctctatgaatgacaaccaattaagagatgtgggtcgt
atactagactcttttgatggggggaacaacttggcaaggagtgctccaaagatggaaggt
gcaggatcagccatacagtatactgatgacttgagtcaggaatgggaccagcgtatctca
tccattataaaactggagtttgataatggggtaaagatagaggctggctgcagcaataat
gacattgacgagattgaccatttctccaacccgtacgcatggatgcaagacaacaaacaa
aaacgtaaaggtacatcagctaatgtacctataccaggtgaggacaatgagaagagatct
cgtggtgacaccttcacacagagactggagaatatcagtgaatccgacttcaagcaagcg
tatatggccaatgtgtttggaaacctgaagcgggatgctggtggtcttcatgctctaaaa
ggaaaacaaataggtctaccacggatagaagtcatggacaacagactttatgaagacatg
ttagaacagcaaaatagtaaggcataccaagagatgttgaaggttcgcaaaagattgccg
tcttacaagatgaaagatgaaattatcgacacgatccaagaaaatcaagtggttgtactg
agtggtgagacaggttgtggaaaaactactcaagtagctcaatttattttggaagacgct
attgccgatggccatggatctacatgccacattgtttgtacgcaacccagacgtatttct
gccatttctgttgcacagcgtgttgctgatgaacgtggtgagaaattaggcaagagcatt
ggttaccagattcgactagaagcagtcaagccacgtgctgaggggtccattatatattgc
acaactggtattgtgctgcagtggttacaaggagacccactcctatcacaggtgtcacac
cttatcttagatgagatacatgagagagatatgttgtcagatttcctcatctgtatagct
aaagacctcataaaagtgaggccagatctgaaggttgtgttgatgagtgctacactgaat
gctgaactcttctcagaatactacggaaactgtccaatgttacacattcctggctttact
ttccctgtcaaagaatactatctggaggatgtcatagaactgaccagatttaagtttgat
gatgagaaaatacccgtctggagaagacgagaccacaagaaaaatcaagaatttgaagat
atgattgcaccttatataagaaatctagaacaaaatcaaaagtattcaagccagacccta
gatgagctgtataagaagaccagtgaagaactaaatacggacttgatattggagttgctg
cgtcacattgctcggcagcctatgggtgctgtcctagtatttctgcctggctgggacaag
atttcaagggtacactcattgatacaaaatgatagaatgttaagtggacgcaattaccta
gtgatcccactacactccatgatgccaacagtcaaccagagggaagtattcaatagacca
cctgaaggtgtacgaaaaatcgttttagcaacaaatattgccgaaactagcataactata
gatgacattgtttatgttattgatgggggatggatcaaaatgaaaaattatgataaagaa
gctaatgtgacaactttacgaccagagtgggtcactattgccaatgcaagacaacgtcga
ggtcgagcaggaagagtacaagatggtgtgtgttatcatctgttcacacgtgcacgaaaa
ttgaccttggatgattatcccctaccagagattcaacgcactcgtcttgaagagattatc
cttcatattaagatcatgcttttaggttctgtgaggccattcttatccaaagtaatgatg
cctcctgacccatctgtggtggatgtgtcacttcagatgcttcgggcaatcaatgcactg
gatgggggtgaaagcgcctctgggcttccatctgctctcccaatagacccattgacaggt
cgtatgctgctcnatgccatattttcctgtgttggacccatcttgacagtggcagcatct
ctatcttttaaggacccatttataattccattgggaaaagaacgtgcagtcgatgaggtg
aagagaaagttaagtggagggaataagagtgatcacctgctgttggtgactgtgtatgag
gaatgggagcgtgcatgtcagcaccatgatgacaaacattattgctgggacaaattcctc
tcctctgctgtgttccatcaacttaaaaacatgcggaaacagttcatgggcttgctgtat
gagaacaaatttgtcaatacaaaagacccctctgaaggtgaagccaatcgcaattctaag
aacatccccttagtgcgggccatcatcacagctggcctgtacccaaatgttgctcgagtc
ttgtcagataatggacgacccagtccctataaaccattgaagatacaaacagcgcaggaa
cgacgcgtttcattacaccctaagtcggtaaatgataaggaaagggattttgaatatcca
tggttaatatacagagaaaagataaagtcatcaaaggtcttcatccatgactgctccatg
gttccaaactatcctcttctattctttggagagaaactgaactatgatcatactaaagga
gtgataaatgttgatgggttcgtacgggttcgcagctctcaacacgtagctcacttggtg
cagaacttacgtaatgaattagatcgacttctggaatacaagattagccatccaggcatg
acacagtgggggagatcaaataaggaaggtgcgctcctccaaacaatcgtggaccttatt
acaagtgagaaaaagacctcacaagattaccaggattatgttgctgaccaagatgatgat
gaaaattga
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