Homarus americanus (American lobster): 121866116
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Entry
121866116 CDS
T07477
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K06823
collagen type XVIII alpha
Organism
hame
Homarus americanus (American lobster)
Brite
KEGG Orthology (KO) [BR:
hame00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hame04147
]
121866116
00535 Proteoglycans [BR:
hame00535
]
121866116
00536 Glycosaminoglycan binding proteins [BR:
hame00536
]
121866116
Exosome [BR:
hame04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
121866116
Proteoglycans [BR:
hame00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
121866116
Glycosaminoglycan binding proteins [BR:
hame00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121866116
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
DUF1554
Motif
Other DBs
NCBI-GeneID:
121866116
NCBI-ProteinID:
XP_042221647
LinkDB
All DBs
Position
Unknown
AA seq
1276 aa
AA seq
DB search
MGRQMDIIRLVMVMMAALATPSSASLFGDSNSVSSKDSLEEVDLLQAIAVPFADSSTQYF
VTGFDGFPAFGFKVGASIKHPYRLFMPERFYRRFSIMIAMKPDTVSPMFVFAVTNPLENI
IQLGVGFIPADQGMSNVSLYYTDGERHMTSQTIASFLVPQFVGSWSRLAFSVTEEDIQLW
YNCELYSDVLVKRVPLQLVFDSASTLYIGQAGGIFKGDFEGALQELKIYNDPSLAKVQCD
DSFTADMENDLESPLPPFEGSGDEDLDGMPPPPPLPPLPPPPLPDYPLQGSKGEKGDSGP
RGPPGDSVTGPPGPPGLPGPPGRSFSSEMPDYGSGDGEDYLPLDFSGEVRGPPGPRGECT
CNMTSLVATVIAKLPNGLPGPEGPAGRDGMSGTPGTPGRPGPPGERGPGGPLGKKGDRGD
SGSPGPEGLQGPKGESGVDGAPGLPGERGPQGPPGPPGWGNAGFDPLWKPRTMFKVDGGL
GMAPARPGTPGTPGDKGEQGALGPRGSRGYPGAKGERGNTGKKGDKGERGLPGEDGSPGP
KGEPGTPGMNGAPGPPGFAGVKGSPGANGEKGDRGEPGVGEQGPPGTPGGLSDEDRRIII
DQLIDTLDGRFKGGEATGGSGISIWDNSGGLPWQEVGDDEDLSLEGSGLVEYKPFYPKGG
SGLRGPTGPMGPSGPPGPPGLMGIAGFAGKKGEVGPPGLPGNEGPSGLQGKPGIPGEVGS
NGDVGPVGPMGMKGDRGPVGPPGPITTVVQPDGTNITVVKGARGERGKRGKRGRRGKPGP
PGSLGDLGLPGWPNDTYIGTPGRPGPPGPPGVGQKGEPGPPGPASGGGSFFNGILGGGNS
DTHTVPGPPGPAGSPGLPGPPGPPGLIGRPHEGENQMYVPVPGPPGPPGPPGIAGTPGLS
IEGPQGPPGEPGMSRRGKAGPPGVPGDSMPGRAASGSLGGIAELRRRISGRRRNRGPPGP
PGPPGRSTDGGRGGAAHRIVPGAVTFPDRDAMIKMSGVSPVGTLAFVVEEEALLVRVAAG
WQYVALGSVVPLPSTTPLPLTTPVHTESVKPPPLEVDSLITGLDGPRRGFPHMLRLAALN
EPFTGDMHGVRGADYACYRQARRAGLKGTFRALLTSRVQNLDSIVRYSDRDLPVVNLKGE
VLFNAWSEAFSGSGGVFAQKPRVFSFDGKEVLTDPTWPQKYVWHGSDVEGERSLSTYCDA
WNSNSQETVGLASSLLKKRLLGQERMSCHNSFAVLCIEATSQTRYRRRRHAGSREQELTS
QQYQEVLKALSRDFDY
NT seq
3831 nt
NT seq
+upstream
nt +downstream
nt
atgggacgacagatggatattatcaggctcgtgatggtgatgatggcggcgctcgccaca
cccagctcagcctcgctcttcggtgactccaactctgtctccagcaaagactcattggag
gaggtggacctgctgcaagccatcgctgtgcccttcgccgactcctccacccagtatttc
gtcacgggcttcgacgggtttccggctttcggctttaaagttggagccagcatcaaacat
ccttaccgactcttcatgccagagaggttctacaggaggttctcgatcatgatcgccatg
aagcccgacacagtcagtccgatgttcgtgttcgccgtcaccaacccgctggagaacatc
atccaactgggcgtgggcttcatccccgccgaccagggcatgagcaacgtctccttgtac
tacaccgatggagagaggcatatgacttcccagaccatcgcctccttcctcgtcccccag
tttgtcggctcttggagcaggctggcgttcagtgtgacggaggaggatatccagctgtgg
tacaactgtgagttatacagtgacgtgctggtcaagcgggtgccactccagctggtgttc
gactccgcctccacactctacatcgggcaggctggcggcatcttcaagggggattttgag
ggggcgctacaggagctcaagatctacaacgacccctccctggccaaggtgcagtgtgac
gactccttcacggctgatatggagaacgacctagagtctccgctaccgccatttgaaggc
tcaggagatgaggacctggatggcatgccgccacccccacccttgcctccgctgcctccg
ccgccactaccagactatcccttacaaggatcgaagggcgagaaaggcgactcaggaccc
aggggtcccccaggggattcagtgaccggtcctccagggcccccgggccttccaggaccc
ccaggcagaagtttttcttcagaaatgcccgattacggttcaggtgacggcgaagactat
cttccgctggattttagtggggaagtacgtggaccacctggcccccgaggggagtgcact
tgcaacatgactagcctggtggccaccgtgatagccaagttgcccaatggtttgcccggt
cccgaaggtcctgctggacgagatggtatgtccggaaccccagggaccccggggcggcca
ggacccccaggggaacggggccctggaggaccactgggcaagaagggagacagaggagat
tctgggagtccaggtcccgagggactgcagggccctaaaggtgagtctggtgtggacgga
gcgccaggactgccgggtgagcgaggaccacaaggacctccaggacctcccggatggggc
aacgctgggtttgaccctttgtggaagcctcgcaccatgttcaaggttgatggcggcctg
ggaatggcaccagcccgcccaggaacaccaggcaccccgggagataagggtgagcaagga
gccctaggacctcggggcagtcggggttaccctggcgctaaaggggagcgaggcaacact
ggcaaaaagggcgacaagggagaaaggggcctaccgggcgaggacgggtcgcctggaccc
aagggtgagccagggacaccaggcatgaatggcgcccctggacccccagggttcgctgga
gtaaagggctcgccaggtgctaatggtgaaaaaggtgatcgtggggagcctggtgtgggg
gaacagggcccacctggtacccctgggggtctttccgacgaggaccgccggattattatt
gatcagttgatcgacacgttggacgggaggtttaagggaggcgaggctactggcggcagc
ggaatcagcatctgggacaactctggaggtctaccctggcaggaagtgggcgatgatgag
gatttgagcttggaggggtctggcctggtggagtacaaacctttctatcccaagggtggt
tctggactgcgaggaccaacggggcccatgggcccttcaggaccccctggaccaccaggg
ttaatgggaatagcaggattcgcaggaaaaaaaggagaagtgggacccccaggactgccg
ggaaacgaaggtccatctgggcttcagggtaagcctggtatccctggtgaagtcggttcc
aacggagatgttggcccagttggtcctatgggtatgaaaggtgaccgaggtcctgttggc
ccacccggacctatcactaccgtggtccagccagatggtaccaacattaccgtcgtcaag
ggtgccaggggtgagcggggcaagcgaggtaaacgaggtcgtcgcggcaaacctgggcct
cccgggtccctaggtgacctgggcctaccgggatggccgaatgacacatacatcggcaca
ccaggacggccagggcccccaggacctccaggtgtcgggcagaaaggtgaaccagggccc
ccgggacctgcaagtggtggcggcagcttcttcaacggaatcctgggaggcggtaattca
gacacacacacagtccctggtccacctggaccagcaggttcacctggtctacccggtcct
cctggcccaccgggcttaattggtagacctcatgaaggcgagaaccagatgtatgtgcct
gtgccggggccaccaggaccaccaggaccacctggtatagcaggtactccaggactgtct
attgaggggcctcaggggccgcctggtgagccaggcatgtcacgcagaggtaaggctgga
cctcctggagtccccggtgactccatgcccggccgagcggcctcaggcagtcttggaggc
attgccgagcttcgccggcggatatctggccgccgcagaaacagaggcccccctgggccg
cctggtccccccggacggtctaccgacggaggccgaggaggcgcagcccacaggatcgtg
ccgggagctgtcactttccctgacagagacgccatgatcaagatgagtggagtatcgccg
gtggggacgctagcctttgtggtcgaggaggaagccttgctggtacgcgtagctgctggc
tggcaatatgtggcgcttggttctgtggtacctctaccaagcaccacccctttaccactc
actactccagtacacactgagagcgtcaagcctccgccccttgaggtggactccctcatc
actggccttgatggtcccaggcgaggatttcctcatatgttacggctagcagcgctgaat
gagccattcactggagacatgcatggggtgcggggagctgactacgcctgctacagacag
gccaggagggcgggactgaaaggcaccttcagagctctcctcacatcccgtgtccaaaac
ctcgattccattgtcagatattccgacagagatctcccggttgttaatcttaagggcgag
gtgttgttcaacgcttggagcgaggccttctcaggctcaggtggagtcttcgcacaaaaa
ccccgtgtcttcagttttgacggcaaagaagtcttgaccgacccaacctggcctcagaag
tatgtatggcatggctctgacgtggaaggtgaaagatctctgtccacctattgtgatgct
tggaacagcaactctcaagaaacagttggcctggcctcttccctgctgaagaagcggctc
cttgggcaagagcgtatgagctgtcacaactccttcgccgtgctgtgcattgaggccacc
agccagacacgctaccgaaggaggcgacacgctgggtccagggagcaagaactgaccagc
cagcagtaccaggaggtgcttaaggctctgagtagagattttgattactag
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