Homarus americanus (American lobster): 121867234
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Entry
121867234 CDS
T07477
Name
(RefSeq) collagen alpha-1(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
hame
Homarus americanus (American lobster)
Pathway
hame04512
ECM-receptor interaction
hame04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hame00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121867234
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121867234
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
hame00535
]
121867234
Proteoglycans [BR:
hame00535
]
Extracellular matrix (ECM) proteoglycans
Others
121867234
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
121867234
NCBI-ProteinID:
XP_042223020
LinkDB
All DBs
Position
Unknown
AA seq
908 aa
AA seq
DB search
WCCRDIFPLGLQEFSLICTYRARRPPRGPWDIIRINDLEDRPQFAVTLNPITENVEFSIL
AYDGTLQTLEFDQAKSAFDTNWHKLHFGVFRDSVTLYLDCENTTQVPLDPFGPIDVNGNI
HIAKLQDSSRTVPRKRQRKNIELQWMVMSCDPASPERETCLELPERELITQERPEQCEVI
CPIGPRGFNGTDGRRGRRGERGLPGDIGEPGLRGFPGAKGESGVQGPPGSVGLPGAQGRQ
GGTGSRGFPGPAGPQGPIGLQGLSGPLGPKGNSGDRGLPGIPGPVGPPGEAGPRGVPGDA
VLVTGPAGEQGPPGIPGLGGPPGLDGLPGGIGPKGESGRRGDRGLNGRRGIPGLKGERGQ
GGPVGPRGEPGVAGPPGAPGGSGGDVNGVAVPGLPGAPGTMGPIGQPGEMGMKGEIGVPG
REGLPGPRGDKGDRGPTGLAGADGSKGEPGRTGSPGSDGAKGELGLPGITGLIGKPGVVG
LPGPQGPMGPPGPEGLKGTAGDRGQPGLAGEPSPPGQPGPQGPQGMQGERGEEGPPGSGG
PPGLRGPPGNHGQIGIIGPKGHAGLPGLKGEPGKPGRRGEVGPMGGVGSRGPAGPQGPPG
RPAKDGTKGTRGIQGPVGPRGLPGPSGPSGPLGPTGSPGLPGFMGKPGPPGPPGPPGPPG
DSAAQPLQVAGERVYGLPGVMGPMGPSGLPGERGADGSRGPEGKRGHPGQSGPAGPSGLP
GSPGQRGPPGNSGIPGTPGREYTEAELRGICASVLRENLAEIAKTLRGPPGIPGIGQRGP
PGEPGEVGAPGAPGPNGETGQRGYTGYPGAAGPPGPAGERGPPGYKGDRGVMGEGRDGKI
GQPGEPGPPGPPGVGLPGRIGERGSPGLNGPQGGRGAPGPQGPPGHCEYCNPALAYQAAA
SQGNTKGP
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
tggtgttgcagagacatcttcccgctgggtctacaagagttctccctcatctgcacctac
cgggctcgtcggcccccccgcggtccctgggacatcattaggatcaatgaccttgaggac
aggccgcagtttgccgttactcttaaccccatcaccgagaatgttgagttctccattctg
gcgtacgacggaacacttcagacgttagagtttgaccaggcaaagagtgccttcgacaca
aactggcataagcttcacttcggtgtgttccgagatagtgtgacgctctaccttgactgt
gaaaatacgacgcaagtaccacttgacccctttggtcccatagacgtcaatggtaatatc
catattgcaaagctgcaagattcttctcgcaccgttccaaggaaaaggcagaggaagaat
attgagctacagtggatggtgatgagctgcgacccagccagcccagagagagagacctgc
ttagaacttccagagcgagagctgataacgcaggagagacctgagcagtgtgaggtcatt
tgcccgattggtcctcgcggcttcaacggcacagacggtcgtagggggcgacgtggtgaa
cgtggcctgcctggtgacattggcgagcctggtctgcgtggttttcctggcgccaagggt
gagagtggagtgcaaggacccccaggttctgttggtctgccaggagcacaaggtcgacag
ggagggactggcagccggggtttccctggacccgcaggacctcaaggtcccattggtctt
caagggctttcgggtcctcttggtcctaaaggaaacagtggtgacaggggtcttccaggt
atacctggtcctgttggtcctcctggtgaggctggccctagaggtgtgccaggtgacgca
gtcttggtgaccggacctgctggcgagcaaggtcccccaggtattccaggacttggaggc
ccccctggtctagatggacttcctggtggaataggacccaagggagaatcaggaagacga
ggcgaccgagggttgaatgggcgacgaggtattccaggactaaagggagaacgtggccaa
ggaggacccgtaggacctcggggtgagccgggggttgctggaccacctggagcacctggc
ggatctggtggtgatgtcaatggagtagctgtgcctggactgcctggtgcacctggcaca
atgggaccaattggacaaccgggtgagatgggaatgaagggtgaaattggagttcccggt
agagaaggtcttcctggtccacggggtgataaaggtgaccgaggaccaacagggctcgct
ggtgctgacggcagtaaaggagagccaggaaggactggaagtcccggcagtgatggagcc
aaaggagagctagggttaccaggcattactggtcttattggcaaacctggagttgttgga
ctgcctggtccccaaggacctatgggtccgcccggtcctgaggggctgaagggtacagca
ggtgatcggggtcagccaggtttggctggagagccgtcaccacccggccaacctggaccc
caaggtcctcaaggtatgcagggagaacgcggtgaggagggaccaccaggttccggtgga
cctcctggacttcggggaccaccaggcaaccatggacaaataggaatcattggtcctaag
ggacatgctggtttaccaggacttaagggagagcctggcaaacctggtcgtaggggtgaa
gttggccccatgggaggagtcggtagtagaggaccagctggccctcagggtccaccggga
cgcccagcaaaagacggtaccaagggaactcggggcattcagggacctgtcggccctcgt
ggcttgcctggaccttccggtccgtcaggtcctcttggtccaactgggtcacctggcctt
cctggcttcatgggtaaacctggtccacctggacccccaggtcctcctggtccacctggt
gactcagccgctcaaccactgcaagtagctggagaacgcgtatatggtctgcccggtgtg
atgggtcctatgggaccatcaggccttcctggtgagcgtggtgcagatggttcccgaggc
ccggaagggaaaagaggtcatcctggccaatctggacctgctggaccatccggtctacct
gggtctccgggtcagcgcggacctcctggtaatagtggtatacctggtacaccgggtcgc
gaatacacagaggctgagttacgtggaatatgcgcttcagttttaagagaaaacttagct
gagatagccaaaaccttgcgaggcccccctggcatacccggcataggacagcgtggacca
cctggtgaaccaggggaagttggtgctccaggtgctcctggacctaatggtgagacggga
caacgcggctacaccggctacccaggtgctgctggtccacctggcccagcaggtgaacga
ggaccgccgggctacaagggtgatagaggagtcatgggtgagggaagagatggtaaaatt
ggacaacccggtgaaccaggaccacctggacccccaggagtgggtcttcccgggaggata
ggtgagcgtggatcccctggtctcaatgggccccagggtggcagaggtgctccagggcct
cagggtcccccaggccactgtgagtactgtaaccctgccttggcgtaccaggcagctgca
tcccaaggtaatacaaaggggccgtga
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