Homarus americanus (American lobster): 121867977
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Entry
121867977 CDS
T07477
Name
(RefSeq) DNA-binding protein SMUBP-2-like isoform X1
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
hame
Homarus americanus (American lobster)
Brite
KEGG Orthology (KO) [BR:
hame00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hame03009
]
121867977
03012 Translation factors [BR:
hame03012
]
121867977
Enzymes [BR:
hame01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
121867977
5.6.2.5 RNA 5'-3' helicase
121867977
Ribosome biogenesis [BR:
hame03009
]
Eukaryotic type
Other ribosome biogenesis factors
121867977
Translation factors [BR:
hame03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
121867977
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
R3H
SMUBP-2_HCS1_1B
AAA_19
AAA_30
zf-AN1
Viral_helicase1
AAA_22
AAA_16
ResIII
DEAD
AAA
nSTAND3
UvrD-helicase
PhoH
DnaB_C
NPHP3_N
UvrD_C_2
AAA_33
Glyco_tranf_2_3
ABC_tran
Motif
Other DBs
NCBI-GeneID:
121867977
NCBI-ProteinID:
XP_042224086
LinkDB
All DBs
Position
Unknown
AA seq
1131 aa
AA seq
DB search
MSVKRPQLSCHDWIVLHTSLLEEERKAEVSAAQTQVEGVSVKTLEARGIVLARLVIKERS
TGLYGRPLFTLVPSKKDAILPANNFSSGDIVGVRVFGSEQDNQVTTAIVTYVSQALIRIV
IDEGADELDTLGDDVLLQLHKLANDVTYRRIKSGLVELEKQISGPSSHLVSVLFGETTPR
STAPSLPPQLTRTDGKLTLYNQKLDSSQEEAVQFAIQRSDLAVIHGPPGTGKTTTVVEVI
RQHVKLKSKILACAPSNLAVDNLVERLAVAGVRIVRLGHPARVTQLTQRYTLDAALFQSD
ESQILGDIRQDISDQLGKLKKAKDKGKRYHIRSEIKTFRKELRERETRLIRQVLLNCDVI
LVTLTSSSNDGPLKFLPPEHFDLVVIDECSQAIEAACYMALLRAPKLIIAGDHCQLPPTI
VSPEAAAKGLEHSLMERIIDQCGEDVVRMLTVQYRMNNLIMQWASSAMYQNRLVAHPSVA
SHLLNQLKDVKTSEDTESALVLIDTAGCECWELDTSDDQSKGNRSEAIIASHQVKTLISA
GVPENDIAVITPYNLQVELVRSLLRTDHPGVEVRSVDGFQGREKEAVIMSLVRSNKQGMV
GFLSEDRRLNVAVTRARRHLTVVCDTDTVSKHAFLKSFTDYVSQHGQVRTAHEYQHELET
TEVETPECIVWKPKTEKKERPKQPYSKNKRQDKPNDKKKYEPPSEEENIRRKKEYEAILG
NFLKSSVQIYAFPPSLNSFERRLIHEICDELGLKHESKGEGKERHIIVQRKSETISEHPE
QENNEAVEEETSGQRREYIAIIDNFLKSSQETYNFSSKINSFERGLIHEICEEFDLQHES
QGEGKKRHVVVQKKNIKVKQHIGKENDETLATEKKEEKANGKLGTEESEISKESSVQNGA
IPKTKVLDGNNTKVRTRFVGGKYEEVIVPVCNDKNTSNSGNKENELKNIAGSMKKHCCSC
GKDILQQNYSIHSAQCEKNMKATHKEKTNKSTQKSTKKKNPKEKISRENDDGEEDFDSII
EQFTKENNTCSHTQCKSPTTVIFQLCPFCRNTFCLTHHMAEVHGCGDLARQHARMMITKE
GVLYPGSGVPSKKPREVQRKQMEKKLEKKMEDFSKQRQAKKNGKNAGKDAK
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtaaaaagacctcagctgtcctgccatgattggattgtgttacacacctctctc
cttgaggaagagaggaaagcagaagtctcagctgctcaaacacaggttgaaggagtatca
gtgaagactttagaagcacgagggatagttttagctcgcctggtgatcaaggagaggtca
actggactatatgggcggccactgtttactcttgttccatctaagaaggatgccatattg
ccagcaaacaacttttcttcaggtgatattgtgggtgtacgtgtttttggttcagagcaa
gacaaccaagtaacaacagctattgtgacatatgtttctcaggcattgatccgaattgtt
attgatgagggtgcggatgaattggacactcttggtgatgatgtactgctgcagctacac
aaactagctaatgatgtaacatatcgaaggattaaatcaggactggttgagcttgaaaaa
cagattagtggtccatcttcacatttagtgtcagttttatttggggagacaacacctaga
tctacagcaccttccctgccaccgcagctaactcggacagatggcaaattgaccctctat
aatcagaaactggacagttctcaagaagaggcagtgcaatttgctattcagagaagtgat
ttagcagtcattcatggcccaccaggcactggcaagacaacaactgtggttgaagttatt
cggcaacatgtgaaattgaaatctaagattctagcctgtgctccatccaaccttgctgta
gataatttggtggaacgacttgcagttgctggtgtacgtatagtacgtttaggtcatcca
gcacgtgttacacagctcacccagagatatacacttgatgcagctttgtttcaaagtgat
gaatcacaaattctgggagatattcgacaagatataagtgaccagctggggaagttaaag
aaggctaaagacaaaggcaagagataccatattagaagtgaaataaaaacattcagaaag
gaacttcgtgaaagagagactcgactgatccggcaggtgcttttgaactgtgacgtgatc
ctggtaaccctgaccagtagcagcaatgatgggccccttaaatttttgcccccagaacac
tttgatctggtggttattgatgagtgctcacaggcgatagaggctgcatgctacatggcc
cttctccgtgcaccaaagctaatcatcgcaggtgatcactgccagctgcctccaaccatt
gtttcgcctgaggctgcagcaaaaggtcttgagcactcactcatggagagaattatagat
cagtgtggggaagatgttgtgagaatgcttacagttcagtacagaatgaacaacctcatc
atgcagtgggcatcttcagctatgtaccagaaccgcttggttgcccatccatcagttgcc
agccatcttctcaaccaattgaaggatgtcaaaaccagtgaagatacagaaagtgctttg
gtactgattgacacagctggttgtgagtgctgggagttggacacttcggatgaccagagt
aaagggaacaggagtgaagccatcatagccagccaccaggttaaaactcttatatctgca
ggtgtacctgagaatgatattgccgtcatcaccccatacaacttacaggttgaactggtg
cgcagccttcttcgaactgatcaccctggcgtggaagtgcggtcggttgatggctttcag
ggacgagagaaagaggcagtcattatgtctcttgttcgttctaacaaacaaggtatggtg
ggattcttaagtgaagatcgtcgactaaatgtggcagtgactcgagcaaggcgacacctg
actgttgtttgtgatactgatacagttagcaagcatgccttccttaagagcttcacagat
tatgtatcgcaacatggtcaggtcaggacagcacatgaatatcagcatgaattggagaca
actgaagtggaaacaccagaatgtattgtgtggaagccaaaaactgagaagaaagaaaga
cccaaacaaccatattcaaagaacaagagacaggataaaccaaatgataagaaaaaatat
gaaccaccaagtgaggaagaaaatattagaagaaagaaagaatatgaagctattcttggt
aattttctcaaatcatctgtccagatttatgcctttcctccctctttaaactcttttgaa
aggcgcttgatccatgaaatttgtgacgaacttggcctaaagcacgagagtaaaggtgaa
ggtaaagagcgacatattattgtgcagaggaagagcgagaccatatcagaacatcctgaa
caagagaacaatgaagcagttgaagaggaaactagtggtcaaagaagagaatacattgcc
attattgacaattttctcaagtcttcccaggaaacttacaacttttcttccaagataaat
tcttttgaaaggggtttgattcatgagatatgtgaggagtttgacttgcagcatgagagt
cagggtgaaggtaagaaacgacatgttgttgtgcagaagaaaaatataaaggtaaaacag
catatcggtaaagaaaatgatgagacactagccacagaaaaaaaggaggaaaaagctaat
gggaaattaggaacagaggaaagtgaaatcagtaaagaaagtagcgttcaaaatggtgcc
ataccaaaaactaaagtattagatggcaacaatacaaaagttcgtacgcgttttgtggga
gggaaatatgaagaagtaattgtcccagtctgtaatgataaaaacacttctaacagtggc
aataaagaaaatgaactaaagaatatagctggctccatgaaaaaacattgttgtagttgt
gggaaggacatcttacagcagaactacagcatccatagtgcacaatgtgagaagaatatg
aaagccactcacaaagagaaaaccaacaagagtacgcaaaagagtacaaaaaagaagaat
ccaaaggaaaaaatcagccgtgaaaatgatgatggagaggaggattttgatagcattatt
gaacagtttacaaaggagaacaacacctgctcccatacgcaatgtaagtcgcccacaact
gtgatatttcaactttgtcccttttgccgcaacacattttgtttgacacatcacatggcg
gaggtgcatggatgtggtgatctggctcgtcaacatgccaggatgatgataacaaaggag
ggagttttataccctggcagtggcgtaccatccaagaaacctcgtgaagtccagcgtaaa
caaatggaaaagaaattggagaaaaagatggaagatttttctaagcaaagacaagctaaa
aaaaatggtaaaaatgcaggcaaagatgcaaaatga
DBGET
integrated database retrieval system
