Homarus americanus (American lobster): 121868109
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Entry
121868109 CDS
T07477
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
hame
Homarus americanus (American lobster)
Pathway
hame03020
RNA polymerase
hame03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hame00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
121868109
09124 Replication and repair
03420 Nucleotide excision repair
121868109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hame03021
]
121868109
03400 DNA repair and recombination proteins [BR:
hame03400
]
121868109
Enzymes [BR:
hame01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
121868109
Transcription machinery [BR:
hame03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
121868109
DNA repair and recombination proteins [BR:
hame03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
121868109
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
121868109
NCBI-ProteinID:
XP_042224314
LinkDB
All DBs
Position
Unknown
AA seq
1125 aa
AA seq
DB search
MTIQRIVEDSQAIDLQAEAQHTGGELETPPRHLLKFEQIYLSKPTNWEKDGYNYSMMPNE
ARLRNLTYSSPLYVDIVKTVIREGEKPTEQKEEKIYIGKIPIMLRSTYCLLSGLTDRDLH
EVNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKCEIRSCIEHSARPV
STLWINMMARGGSSAKKSAIGQRIIGVLPYVKQEIPVMIVFRALGFVADRDILEHIIYDF
DDPEMMEMVKPSLDEAFVIQEQNVALNFIGGRGARPGVAKEKRIKYAREILQKEMLPHVG
VSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLMALLFRGLFRNLM
KEVRMHAQKLLDKGQEYGLDAAVKPKLITDGLRYSLATGNWGDQKKAHQARAGVSQVLNR
LTFASTLSHLRRVNSPIGRDGKLAKPRQLHNSLWGMICPAETPEGAAVGLVKNLALMSYI
SVGSQPAPILEFLEEWSMENLEEIAPSSIDDATKIFVNGCWVGIHRDPEQLMMTLRKLRR
QMDIIVSEVCMVRDIRDREIRIYTDAGRICRPLLVVENGKLLLKKRHIDLLKEREYNNFS
WQDLVASGVVEYIDCSEEETIMIAMSLEDLGVEEEKTYCNTYTHCEIHPAMVLGVCASII
PFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLFYPQKPLVTTRSMEYLRFRE
LPAGINSIVGIACYTGYNQEDSVIMNLSTVERGFFRSCFYRSYKDAETRRSGMQEEQMFE
KPARDTCQGMRHAIYDKLDDDGIISPGMRVSGDDVIIGKTITLPESEDELEGQTRRFSKR
DASVFLRGSETGIVDQVMLTVNVDGDRFTKIRVRSVRIPQIGDKFASRHGQKGTCGIQYR
VEDMPFTVEGITPDIIINPHAIPSRMTIGHLIEALQGKLGANKGEIGDATPFNDAVNVQK
ISNLLQEYGYHLRGNEIMYCGHTGRKMNAQIFLTPTYYQRLKHMVDDKIHSRARGPVQIL
VRQPMEGRAREGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYSVHVCNLCGLMCIANL
RNNTFECKGCRNKTQISQVRLPYACKLLFQELMSMNIAPRMMVIK
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgaccattcagagaattgttgaggattcacaagcaatagatctccaggctgaggctcaa
catactggtggtgaactggaaactccaccacggcacttgctgaaatttgagcagatttat
ctgagtaagccaaccaactgggaaaaagatggctacaactacagtatgatgcccaatgaa
gcaagattaagaaacctcacatattcctctcctctgtacgttgatattgtgaagactgtc
attcgggaaggggagaagcccacagagcagaaagaagagaagatctatattggtaagatc
ccgatcatgttgcggtcaacatactgcttattgagcgggctgactgatcgtgaccttcat
gaagtaaatgaatgtcctctagatcctggtggttatttcatcatcaacgggtctgagaaa
gtgctgattgctcaggaaaaaatggcaactaatacagtatatgtgttcagcatgaaggat
ggcaaatatgcatacaagtgtgagattcgttcttgtattgaacactctgctcgacctgta
tcaactctctggatcaacatgatggctaggggtggtagtagtgccaaaaaatctgctatt
ggtcagcgtatcatcggtgtcttaccttatgtgaagcaagaaatcccagtgatgattgta
tttcgtgctctgggctttgtagcagatcgagatatcctagagcacatcatatacgatttt
gatgatcctgaaatgatggagatggtaaaaccgtctctggatgaggcatttgtgattcaa
gagcagaacgttgcactgaatttcattggtggacgtggtgcccgtcctggagtcgccaaa
gagaaacgtatcaaatatgcccgtgagatcttacaaaaagaaatgctgcctcatgtaggt
gtttcagacttttgtgagacaaagaaggcctatttcttaggatacatggttcatagactt
cttctggcagctctaggtcgtcgtgagctagatgatcgtgatcactatggtaacaagagg
ttggatttagctggtccactcatggcactactttttagagggttgttccgtaacttgatg
aaggaagtccgcatgcatgcccagaagcttttggataagggccaagagtatggtctggat
gcagcagtcaaacctaagctcattactgatggcctacggtactctcttgccactgggaac
tggggagaccaaaagaaggctcatcaggccagggctggtgtatcacaggtgttgaaccgc
ttgacctttgcctcaactctgtctcatcttcggcgtgtcaactctcccattggtcgtgat
ggtaaattggctaagccaagacagctgcacaactcactgtggggaatgatctgccctgca
gaaacaccagaaggagctgctgtaggtttggtgaagaatctagctcttatgtcctacatc
tctgttggatcccagccagcacccatcttggagttcttggaggagtggtccatggaaaac
ttggaggaaattgcaccatcatcaattgatgatgccacgaagatttttgttaatggttgt
tgggttggcattcatcgtgatccagaacaactcatgatgactctccgcaaattgaggcgt
cagatggatattattgtatctgaggtgtgcatggttcgagacatcagggacagagagata
cgtatctatacagatgctggtcgtatctgtcgccctcttctggttgtggagaatggtaaa
ctccttctcaaaaagagacacatcgacttgctcaaagaaagagaatacaacaacttcagc
tggcaggatctagtagcaagtggtgtggtggaatacatcgactgctctgaagaagaaaca
atcatgattgccatgtcactcgaagatttaggcgtggaagaggaaaagacctactgtaac
acatacactcactgtgaaatccaccctgccatggtcctcggagtatgtgcctccattatc
cccttccctgatcacaatcagtctcctcgtaacacttatcagagtgctatgggtaagcaa
gctatgggtgtgtacatcactaatttccatgttaggatggacacccttgcacacgtattg
ttctaccctcaaaaaccacttgtcactacacgttctatggagtacctacgtttccgagaa
ttgcctgcaggtatcaactctattgttggcattgcttgttatactggttataaccaagag
gactctgtcattatgaacttgtcgacagtggagcgtgggttctttaggtcttgcttttac
cgctcttacaaagatgcagaaacaagacgctcgggaatgcaagaagaacaaatgtttgag
aagcctgcgagggatacttgccaaggtatgcgacatgctatatatgacaaattagatgat
gatggcatcatttcacctggcatgcgtgtatctggcgatgatgtgatcattgggaagacc
atcaccctgccagaaagtgaagatgaattagaaggccagacgagacggttcagcaaaagg
gatgccagtgtgttcttgagaggctcagaaactggtattgtagatcaagtcatgttgaca
gtaaatgtagatggtgatcgtttcactaagattcgtgtgaggtcggttcgcatcccccag
attggtgacaagtttgcctctcgtcatggacagaagggtacttgtggtatccaatacaga
gtggaggatatgcccttcacagtagaaggcatcacgcctgacatcatcattaatccacac
gctattccatcccgaatgacaattggtcacttgattgaagcgcttcaagggaagcttggt
gccaataagggtgagattggtgatgctacaccctttaatgatgctgtcaatgtacagaag
atatccaacttactacaggagtatgggtatcatttgagaggcaatgagattatgtactgt
ggtcacactggacgtaagatgaacgcccagatttttttaactccaacatactatcaacgt
ttaaagcatatggtggatgataagatccattcccgagctagagggcctgtgcagatccta
gttaggcagcctatggaaggtcgtgcaagggaaggtggcttgcgttttggtgagatggaa
cgagattgccagattgctcatggggcagcacagttccttcgtgagcgtttgtttgaagtc
agcgatccatattctgtccatgtgtgcaacctatgtggtctcatgtgtattgctaatttg
cgcaacaatacctttgaatgcaagggttgccgcaacaagactcagatctcacaggtgcga
cttccatacgcttgcaagttactattccaagaattgatgtcgatgaacattgcccctagg
atgatggtgatcaaataa
DBGET
integrated database retrieval system
