Homarus americanus (American lobster): 121869311
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Entry
121869311 CDS
T07477
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4-like
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
hame
Homarus americanus (American lobster)
Pathway
hame03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hame00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121869311
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hame03041
]
121869311
Spliceosome [BR:
hame03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
121869311
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40
Beta-prop_WDR5
WD40_Prp19
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_Gbeta
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_Aladin
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
PRP4
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_WDR19_1st
Beta-prop_IFT122_1st
Ge1_WD40
eIF2A
Beta-prop_SPT8
Beta-prop_Nup120_160
WD_LRWD1
Nbas_N
Beta-prop_ACSF4
Beta-prop_NUP159_NUP214
Beta-prop_VPS8
Motif
Other DBs
NCBI-GeneID:
121869311
NCBI-ProteinID:
XP_042226498
LinkDB
All DBs
Position
Unknown
AA seq
507 aa
AA seq
DB search
MSDGEDSPVVVGGGGVSERQWYAPDTAMSGAESPPDSPDSPVNSANIHTSNEYMELDEPE
MLDEKKALLEEFERKRRARMIHVTTDDSEVKQQLRQLGEPICLYGEGPADRRNRLKEILS
RLGEDALKKTVGGQQEADTPDHDQERPEETWYHEGPQPLKEARNFIVNYSIPRARARLKR
EHLENQVPEATRTARRQEVQNKLRSFGLLGSQNADARPICYCSFSPNGKLLATSSWSGLV
KLWQVSNCLEERTFRGHNCYVDCVEWHPSATLSMEPTALNLVSSGRDGTVQLWSLNGEEP
LGELPTLEARVSRVCFHPSGRFLGACVHDNSMRLWDLEIQEEVLFQEGHSKPVYCLAFQK
DGSLAATGGMDAYGRIWDLRTGRCVMFLSAHQNPVLAIDWSPDGYHLVTGSEDNTARVWD
MRQRRCIYTIPAHTGIITGVRYDRIGGQYIVTCSYDGSVRLWCHGSFQPMRALEGHGQKV
MGVDVSPTEGIIATCSFDRTFKIWGPD
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatggagaagactcccccgtggtggtgggtggtggaggggttagtgagcgccag
tggtatgcaccagacactgcaatgtctggtgcagaatccccaccagattcccctgatagt
ccagtaaattcagcaaatattcataccagcaatgaatacatggagttggatgaaccagaa
atgctggatgagaaaaaagcattgttggaggagtttgagcggaagcgtcgagctcgaatg
attcatgttacaacagatgatagtgaggtaaagcagcagttaagacaactgggtgagcca
atttgcttgtatggtgaaggccctgctgatagaagaaaccgcttgaaagaaattttgtcc
cggcttggtgaagatgctctgaaaaagacagttggtgggcaacaagaagctgacacacca
gaccatgatcaagagcgaccagaggagacgtggtatcacgagggaccacagccgttaaaa
gaggcacggaattttattgtcaattattccattcctcgtgctagagcaaggttgaaaaga
gagcatctagaaaaccaagtcccagaagcaacacgcactgccagaaggcaggaagttcag
aataaattaagatcatttggtcttttaggtagtcaaaatgctgatgctagaccaatttgt
tattgtagttttagtccaaatggaaaactcttagcaaccagttcatggagtggtcttgtc
aagttatggcaagtaagtaattgtttggaggaacgaacatttcgcggccacaattgttat
gtagactgtgttgagtggcaccctagtgctacattatctatggagccaacggctttgaat
ttggtgtctagtggacgtgatggaactgtgcagctatggagcttaaatggagaggagcct
cttggggaacttccaactctcgaagcaagagtatcacgagtttgctttcatccaagtgga
aggttccttggtgcatgtgtacatgataatagcatgaggttatgggatttagagatccaa
gaagaggttcttttccaagaaggtcattctaagcctgtgtactgcttagcttttcagaag
gatggatcattagccgccacaggtggcatggatgcttatgggcgtatttgggacctgaga
acagggaggtgtgttatgttcttgagtgcacaccagaatccagttttagccattgattgg
tcccctgatggctaccatttagtaacaggcagtgaggataacacggcaagagtttgggac
atgaggcaacgtcgatgtatctacactatcccagctcatacaggcattattactggtgtt
cgttatgatagaataggaggacagtacatcgttacatgttcatatgatggttcagttcgt
ctttggtgtcatggatcttttcaaccaatgcgtgctctggaaggacatggccagaaggtt
atgggtgtagatgtttcacccacagaaggtatcattgcaacctgttcctttgaccgtaca
ttcaaaatttggggtccagactaa
DBGET
integrated database retrieval system
