Homarus americanus (American lobster): 121870698
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Entry
121870698 CDS
T07477
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
hame
Homarus americanus (American lobster)
Pathway
hame03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hame00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121870698
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hame03041
]
121870698
03009 Ribosome biogenesis [BR:
hame03009
]
121870698
Enzymes [BR:
hame01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121870698
Spliceosome [BR:
hame03041
]
Complex A
U2 snRNP components
U2 related factors
121870698
Complex B
121870698
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
121870698
Ribosome biogenesis [BR:
hame03009
]
Eukaryotic type
90S particles
Helicases
121870698
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
Flavi_DEAD
SRP54
nSTAND3
ResIII
AAA_25
ABC_tran
AAA_30
HTH_IclR
Ral
Motif
Other DBs
NCBI-GeneID:
121870698
NCBI-ProteinID:
XP_042228585
LinkDB
All DBs
Position
Unknown
AA seq
749 aa
AA seq
DB search
MSKRKIDIDPAALRKRYAADHEREFDRESSYTSSGSLGTQSSFKTITNEPIKPGVNLPSN
VQRGAVAMSLNPFTNLPYTPRYYELYRKRIGLPVWEYRNKFFDLLDRHQTIVLVGETGSG
KTTQMPQWCVEFARCRGKKAVACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCS
SSKTVLKYMTDGMLLREAMSDPMLENYQVILLDEAHERTLATDILMGVLKEVLKQRNDLK
LVVMSATLDAGKFQHYFDKAPLLNVPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHICEE
IPGDVLLFLTGQEEIEEACKRIKREVDALGPDVGDLKCIPLYSTLPPNLQQRIFEAPPPN
KQNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQ
QRAGRAGRTRPGKCFRLYTEKAFKNEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDF
MDPPAPETLMRALELLNYLAALDDDGNLTELGAIMAEFPLDPQLAKMVIASCDFNCSNEI
LSITAMLSVPQCFVRPNEAKKAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDVQWCYDN
FVNYRSLKSADNVRQQLSRIMDRFSLKRTSTDFNSRDYYMNIRKALVSGFFMQIAHLERT
GHYMTIKDNQVVQLHPSTCLDHKPEWVLYNEFVLTTKNYIRTVTDIKPDWLIKVAPNYYD
MQNFPQCEARRQLENIITRLESRQFREGF
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcgaaaaatagacatcgatcctgcagcactgagaaagagatatgctgctgac
catgaacgtgagtttgaccgtgagagtagttacaccagcagcggaagtctgggcacccaa
agttcgtttaaaacgataacaaatgaaccaattaaaccaggcgttaatttaccgtctaat
gttcaaaggggagctgttgctatgtctctcaatcccttcacaaacctgccgtacactcca
agatactatgagttatacaggaaaagaattgggctgccagtgtgggagtatcgtaacaaa
ttttttgatctcctggatcgtcatcaaacaatagtgttggttggtgaaacgggctcgggt
aaaactacacagatgccacagtggtgtgtggaatttgcacgctgcagagggaagaaagca
gtggcatgcacacaaccaaggagagtggctgcaatgtcagttgctcagcgtgttgcagag
gaaatggacgtggctttaggtcaagaggtgggttattccatccgatttgaagattgttcc
tcctctaaaactgttctcaagtacatgactgatggtatgttgcttcgagaggccatgagt
gaccccatgcttgaaaattatcaggtaattttgcttgatgaggcccacgaacgtactctt
gctacagatatcttgatgggtgtcctgaaggaggtcctaaaacagaggaatgatctcaag
cttgtcgtcatgtctgccaccctggacgctggcaagtttcagcattactttgataaagcc
cctttgttaaatgttcctggccgtactcatcctgttgaaattttctacaccccagagcca
gagagagattatctagaggctgctattagaactgttatacagatccacatatgtgaagaa
atacccggtgatgtgttgttgttcctcactggtcaggaggagatagaggaggcttgcaaa
cgcatcaagagagaagtagatgctcttggtccagatgttggtgaccttaagtgtatacct
ctatattccacacttcctccaaacctccagcaacgtatatttgaagctccgcctccaaat
aaacaaaacggagcaataggtcggaaagtggtggtgtctacaaatattgctgagacttcg
ttgaccatcgatggagttgtctttgttattgacccgggatttgcaaaacaaaaggtttac
aatcctcgcatccgtgtagagtcactgttggtgtcccctattagtaaggcctcagcacag
caacgagcaggccgtgcaggcagaactagacctggcaaatgtttccgattatatacagaa
aaggccttcaaaaatgaaatgcaggacaacacataccccgagatcttgaggtccaacctc
gggtcggtggtgttgcagctgaaaaagttgggtatcgacgatctggttcactttgatttc
atggatccaccggctcccgagactcttatgagagcgctggagcttttgaactacctggca
gctcttgatgatgatggtaatctaacggaacttggagcgatcatggccgagttcccactg
gatcctcagttagccaaaatggtgattgcctcttgcgatttcaactgctctaacgagatc
ctgtctataactgctatgctatcagtaccccagtgctttgtgcgccctaatgaggctaag
aaggctgcagacgaggccaagatgagattcgcgcacatagatggggaccacctcacgctg
ctgaacgtctatcatgccttcaaacagaatatggaggatgtgcagtggtgctacgacaac
tttgtcaactaccgttctctcaaatcggcggataatgttcgtcaacagttatcccgtatt
atggaccgtttcagtctaaagcgcacgtccactgacttcaattcccgtgactactatatg
aatattcggaaggctctggtttcgggcttcttcatgcagattgctcacctggaacgcacc
gggcactacatgaccatcaaggataatcaggtggtgcagctgcatccgtccacctgttta
gaccacaaacccgagtgggtcctatacaatgaattcgtcctaaccaccaagaactacatc
cgaactgtaacagacattaaacctgattggctcatcaaagtggctcctaattactacgac
atgcagaacttcccccagtgcgaggctcggagacagctggagaacatcataacgcgctta
gaatctagacagttcagagaaggtttctaa
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integrated database retrieval system
