Homarus americanus (American lobster): 121870719
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Entry
121870719 CDS
T07477
Name
(RefSeq) NPC intracellular cholesterol transporter 1-like
KO
K12385
Niemann-Pick C1 protein
Organism
hame
Homarus americanus (American lobster)
Pathway
hame03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
hame04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
hame00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
121870719
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
121870719
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
hame02000
]
121870719
Transporters [BR:
hame02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
121870719
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NPC1_MLD
NPC1_N
Sterol-sensing
Patched
MMPL
Folate_rec
ACR_tran
Motif
Other DBs
NCBI-GeneID:
121870719
NCBI-ProteinID:
XP_042228595
LinkDB
All DBs
Position
Unknown
AA seq
1333 aa
AA seq
DB search
MKMTGTVRRVTAVLLLSVVWQVSGQDEGGTCVWYGQCGQNPDASGGHMANCPYTGPPKPM
DPITQGKLASLCPEFVAAITPSDPAANISTCCDPDQVTTLNQQMATGLGLLQRCPSCVRN
FRQLFCHMTCSPHQNDFMFAKVIKNATDTKKPVITTLAVHVTEEFVDGVYTSCKDVAMPS
ANEKAMSIMCGKWGTYYCTGERWFNFMGSVANSFAPFQIDYIYKESTNTTFKPFNETITP
CSAAISNDSRACSCLDCEASCPQPSPLPPLPQPFTIYGVDGLEVVMALVFLLITSTFLTI
YVCHSCRSQSIDISIDTPTGPSWAEEPSCLERAGSWIDDALQKFFTAWGTVCAEHPWTVL
IVGLLVSVGLSVGIIFLKVTTDPVELWAAPNSRSRIEKEFFDKNFEPFYRTEMLIIRPVG
IGSVSHQTPDGQEMWGPVFNMTFLQEVLKLQNHITGNILGRVNKEEVSLQDICFKPLSPT
NNNCTIQSVLNYFQNDPGNLNISSEDAFGHEVNYLNHLDSCFRNPVSPIEEQLGIPCLGE
YGGPVFPFIALGGFLNGSQDLGANPPYKNATALVITLVVNNFYDKDKIAEAMAWEEAFLQ
FMKNFSHPMMDIAYTAERAIQDELKRESEGDIITILISYCIMFAYIALALGDFTRCSRLL
VDSKITLGLGGVLIVLISVSSSVGFYGYIGVPATLIIIEVIPFLVLAVGVDNMFILVQTY
QRESRRPTETRSDHIGRVVGQVAPTILLASCSEAACFFLGALSGMPAVHAFALYAGLALT
IDFLLQVTCFVSLVALDAKRQEENRFDILCCVRGSDKEGTSQEGSLQKVFKYVYTPALLS
RVVRPAVMIVFFGWFCSSIAVLPKIVIGLDQELSMPDDSYLQKYFVYLSEFLSVGPPVYF
VLKGNFHFNNFSEQNKICGTVDCNSDSLSTQVYIASLLSNRTFVAQPASSWLDDYMDWSL
FNIDGEAGNPCCRVREDGSFCPASSYDDCAHCNISVIDDGLRPDPTSFMEYLPFFLEDVP
SEDCPKAGHAAYGQAVNIITNPDNETSVGASYFMTYHTILKSSHDYYAALEWARDISQNI
TMTINKGLEQPQYEVFPYSVFYVFYEQYLTMWEDVLKSLGISLVTVLLVSIVLSGLDVAS
SCMVIITIMMILVNLGGLMYWWDISLNAVSLVNLVMAVGISVEFCSHITHAFSLSMEETR
LQRAKDALITMGSSVLSGITFTKFGGIIVLAFAHSKIFKVFYFRMYLGIVLFGAAHGLIF
LPVILSFFGPKSNRCRIQKRQWSRIAESFHGSMSLNEEVPDLQHPINISAVDTHIIQPDI
HPSYGGTDNEAFT
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgacgggaacagtaaggagagtaacggcggtgctgctgttgtccgtggtgtgg
caggtctctggtcaagatgaaggtggtacgtgcgtgtggtatggacagtgtggccagaac
ccagacgctagcggtggtcatatggccaactgcccgtacacagggccccccaagcccatg
gaccccattacccagggcaaacttgcctccctgtgcccagagttcgtcgctgccatcact
ccatctgatccagctgccaatattagcacttgctgtgacccagatcaggtcactacattg
aaccagcagatggctacggggctgggccttctccagcgatgtccatcctgcgtgaggaat
ttccgtcagctattctgtcacatgacatgtagccctcaccagaatgactttatgtttgcc
aaagtaataaaaaatgctactgacacaaaaaagccagtcatcaccacactggcagtacat
gtcactgaagaatttgtagatggagtgtacacttcctgtaaggatgttgccatgccatcg
gccaatgagaaagcaatgtctataatgtgcggaaagtgggggacatactactgcacagga
gaacgctggtttaacttcatgggatcggtggccaattcctttgcaccatttcagattgat
tatatctacaaagaaagtacaaacacaacatttaaaccatttaatgagactatcactcct
tgtagtgctgccatatctaatgactcccgagcctgcagctgtttggactgtgaagcctcg
tgcccccagccgtcccctctccccccactaccacagcccttcactatatatggggttgac
gggctagaggtggtcatggcgctggtgttcttgctcatcacgtcaacgtttctcactatt
tacgtgtgtcattcgtgtcgctctcagagtattgatatttcaatcgatacccctactgga
ccatcgtgggccgaggagccgagctgtttagagagagccgggtcctggatagacgacgct
ttgcaaaaattcttcacagcttggggtacagtttgtgccgaacacccctggactgtgcta
atagtgggacttctggtatcagtcggcctctccgttggcatcatcttcctgaaagtgacc
acagatccggttgagctgtgggcggctccaaattccaggtcgcgcatcgagaaggaattc
ttcgacaagaacttcgaaccattttaccgcacggagatgctcatcatccgtcccgttggc
ataggctcggtctctcaccaaactcccgatggccaagagatgtggggtccagtattcaac
atgacattcctacaagaggtgctcaaactacagaaccatatcaccggaaatatattgggt
agggttaacaaggaggaagtttccctgcaggacatctgcttcaagccgctctcacctacc
aacaacaactgcaccatccagagtgtgttaaactacttccagaacgacccgggcaatctg
aatatctcctcggaagatgcattcggacacgaggtcaattatctcaaccatctggattct
tgcttcaggaaccctgtatcacctattgaagaacaattaggaattccttgtcttggtgaa
tatggtggtcctgtcttccccttcattgccttgggaggattcttgaatggatcacaggac
cttggggccaatcctccatacaagaatgccacagctcttgttattaccctggtggtcaat
aacttctatgacaaggacaagattgcggaagctatggcctgggaggaagcattcctccag
tttatgaagaatttctctcaccccatgatggacatcgcttatactgctgagcgagcaatc
caggatgaactgaagcgcgaaagcgagggcgacatcataactatcctcatctcgtactgc
atcatgttcgcttatatcgctctggccctcggggacttcactcgctgtagtcgtcttctg
gtggactccaagatcactctcggcctcggtggtgtgctcatcgtgcttatctctgtctcg
tcgtccgttggtttctatggttacatcggcgtccctgccactcttattatcattgaggtt
attccctttttagttttagctgttggtgttgacaacatgttcatcttagttcagacatac
cagcgagaatctcgtcgaccaacagagacgcgttcagatcacattggtcgcgtcgttggg
caggtggcgcctaccatcctacttgcctcgtgctcggaggctgcttgtttctttttagga
gcgttgtcgggcatgccagctgtacatgccttcgctctctatgctgggttggctctcact
atcgacttccttctacaagtgacgtgttttgtctcgcttgtggctctcgacgctaagaga
caggaagaaaacaggtttgatatcctgtgttgtgtcagaggctcggacaaagagggaaca
tctcaagaaggatcattacagaaggtgttcaagtatgtttacaccccagcgcttctctcg
cgcgtcgtccggcccgccgtgatgatcgtgttcttcgggtggttctgctccagtattgcc
gttttacccaagattgtcattggtctcgatcaagaactttcaatgcctgatgactcctac
cttcagaaatattttgtttacctgagtgaattcctgagtgtgggaccacctgtttacttt
gtacttaaaggaaatttccacttcaacaatttctccgaacaaaacaagatttgtggcacc
gttgactgtaactcggacagtttgtcaactcaagtgtatattgcttctctcctttccaac
agaacctttgttgctcagccagcatcatcatggctcgacgattacatggattggtctctg
tttaacatagacggtgaagctggtaacccctgttgccgtgtcagagaagacggctccttc
tgtccagcgagttcatatgacgattgtgcacattgtaacataagtgtgatagatgatgga
ctacgacctgatcctacctctttcatggagtatttgccctttttcctggaagatgtaccc
tccgaggactgtcctaaggcaggtcacgcggcatatggacaagcagttaacatcatcacc
aaccctgataatgagacgagtgttggcgccagttacttcatgacatatcacaccatcttg
aagtcatcgcatgactattacgcagctctcgagtgggccagagacatctcccagaacatc
acgatgaccataaacaaaggcttagagcagcctcagtatgaagtgttcccatacagtgtc
ttctatgtgttttacgagcagtaccttacaatgtgggaagacgtgttgaaatctctgggc
atctccctggtcactgtgcttctggtgagcatcgtcctctctggcctggacgtggcctcg
tcctgcatggtcatcatcaccatcatgatgatcctcgtcaacctcggtgggctcatgtac
tggtgggacatctccctcaacgcagtctcgctggtcaacctcgttatggctgtgggtatt
tcagtggagttttgcagtcacattactcatgcgttctccctctctatggaagaaaccaga
ctacaacgggcaaaagatgcactcatcactatgggcagctcagttctgtcgggcatcacg
ttcaccaagtttggtggcatcattgtactagcattcgcccattcaaaaatcttcaaagtt
ttctatttccgcatgtacctgggcatcgtactgtttggtgcggcacatggtttgatattc
ctgcctgtcatactcagcttctttgggccgaagtccaacaggtgccgcatacagaaacgt
cagtggagtcgtattgcggagagcttccacggctccatgtccctgaacgaagaggtgcct
gacctgcagcatcccatcaacatttccgctgtagacactcacataatacagcccgacatc
catcccagctatggaggcacagacaatgaggcatttacttga
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integrated database retrieval system
