Homarus americanus (American lobster): 121870967
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Entry
121870967 CDS
T07477
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
hame
Homarus americanus (American lobster)
Pathway
hame03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hame00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121870967
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hame03019
]
121870967
03041 Spliceosome [BR:
hame03041
]
121870967
Messenger RNA biogenesis [BR:
hame03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
121870967
Spliceosome [BR:
hame03041
]
Complex B
Other components
Prp19-related factors
121870967
Complex C
121870967
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
NRDE-2
TPR_8
DUF7041
ARM_TT21_C
Cwf_Cwc_15
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
121870967
NCBI-ProteinID:
XP_042228889
LinkDB
All DBs
Position
Unknown
AA seq
856 aa
AA seq
DB search
MIMDNSPLIIETDDLQYEEELLRNPFSVKHWQRYIEHQKDASPEKLNKVYERSLLQMPGS
YKLWHQYLRLRMQQVKGRCITDPEFESVNNTFERGLVFMHKMPRVWIDYCQSLMNQRKIT
RTRKTFDRALCALPITQHNRIWPLYLKFVMTHPIPETAVRVWRRYLKLCPEDTEDYITYL
ISIGRLEEAAKKYEWCVNTDSFTSKYGKSKHQLWSELCELISKNPQETSLKNAEAIIRHG
LQRYTDQVGMLWNSLAEFYIISALFERARDVFEEGLRSVMTVRDFTQVFDAYAQFEELML
KKRMEEVGVEVDEEEEIDLELRLARYEDLMQRRPLLLNSVMLRQNPHNCLEWQKRVTLYE
GKPKMIVATYMEAVKTIDPKQATGKLFSLWVNFAKFYEENNQIVDARIIFQRATEVAYVK
VDDLASVWCEWAEMEIRHDNEEEALKLMKRATAPPPHKVAYNDESEPVQRRVYKSLKLWS
MYADLEECLGTFKSCKAVYDRIIDLRIATPQIIINYGMFLQENNYFEEAFKAYEKGISLF
KWPYVYDIWNTYLTKFLERYMGTKIERARDLFEQCLEKCPPSYARNLYLLYAKMEEDHGL
ARHAMQVYSRATKAVPPEEKLAIYNIYLQHAQQIYGVTRTREIYQEAIDDLPDEGAREMC
LRFSEMERKLGEIDRAREIYAYCSQICDPRITAEFWAKWTDFEVAHGNEDTMKELLRIKR
SMQAKYNTQVNMMSAQMLASADTVAGTVSDLAPGAKDGMRMLEARAVAMNQLEEQNAPTT
HAPPAGGSKIMFVRGTTTKREDEVADTARTTNPDEIDIDDEDENDDDDDEEEEDDDDDLP
QQREVPSAVFGQLKKD
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atgatcatggataattcaccactaattattgagacagatgatctgcagtatgaagaggaa
ctacttcgtaaccctttttcagtaaagcactggcaacgttatatagaacatcagaaggat
gcttctccagaaaaactcaataaagtctatgagagatcattacttcagatgccgggaagt
tacaagctatggcaccagtatcttagattgcgtatgcagcaggtgaaaggtcgatgtatc
acagacccagagtttgaaagtgtgaacaacacttttgaacgtggcttggtattcatgcac
aaaatgcctcgtgtgtggatagattattgccaatctttaatgaaccagagaaagataaca
agaactcggaagacatttgaccgtgccctctgtgctctaccaatcacacagcataaccgc
atatggcctctgtatctcaagtttgttatgactcaccctattccagaaacagctgttaga
gtatggaggagatacctgaagctgtgcccagaggacacagaggattatatcacttacctc
atatctattggccggttggaagaagcagccaagaaatatgaatggtgtgttaacacagat
tcatttacttcaaagtatggcaaatccaagcatcagttgtggtctgaactctgtgagctc
atctctaaaaacccccaagaaacgagcctgaaaaatgcagaagccatcatacgtcatggc
ctccaacgttacactgatcaagtgggtatgctgtggaactctctggctgaattctatatc
atcagtgctctttttgaaagagctcgagatgtgtttgaagaaggactgagaagtgtgatg
acagtgcgagattttacacaggtttttgatgcttatgcccagtttgaagaattaatgctg
aagaaacgtatggaagaagtaggagttgaggttgatgaagaggaagaaattgatctggaa
ttaaggttggcaagatatgaagatttgatgcaacggcgaccacttttacttaactcagtc
atgttgcggcaaaacccacacaattgtttggagtggcagaagagagtgacgctttatgaa
ggaaaacctaagatgattgttgctacatacatggaagctgtcaaaacaattgacccaaaa
caggcaacaggaaagctgttttcactttgggttaactttgccaagttttatgaagagaat
aaccaaattgtagatgcacgaataatattccagcgagccactgaagttgcttatgtaaag
gttgatgatcttgctagtgtttggtgtgaatgggcagagatggagatcagacatgacaat
gaagaagaagctctgaagcttatgaagcgagctacagcaccaccaccccacaaagttgcc
tataatgatgaatcagaacctgttcagcggcgggtatacaagtctcttaagttatggtca
atgtatgctgaccttgaggagtgtttaggcacctttaagtcctgtaaagccgtgtatgat
agaatcatcgacctacggattgctacaccacaaatcatcataaattatggaatgtttttg
caggaaaacaactattttgaagaagcatttaaagcatatgaaaagggcatctccctcttc
aagtggccatatgtttatgatatatggaacacctacctcaccaagttccttgagcgctac
atgggaaccaagatagagcgggctcgagatctctttgaacagtgtctggagaaatgtccc
cccagctatgctaggaacctgtacctcttatatgccaagatggaggaagatcatggactg
gccagacatgctatgcaggtgtacagtcgtgccactaaggctgtaccacctgaggagaaa
ctggctatatacaatatctacctacaacacgcacaacagatttatggtgttacaagaacg
agggaaatttatcaggaggcaattgacgaccttcctgatgaaggtgctcgtgaaatgtgt
ttacggttttcggagatggagaggaagctcggtgaaattgaccgtgctcgggaaatttat
gcctattgcagtcagatatgtgatcctcgcattactgccgagttctgggccaagtggact
gattttgaagtggctcatggcaatgaagacaccatgaaggaactacttcgtatcaagcga
tcaatgcaagccaaatacaatacacaggtgaacatgatgtcagcacagatgttagcatct
gcagacacggtcgctggcactgtctctgaccttgcaccaggagcaaaggatggtatgcgt
atgttggaagcacgtgctgtagccatgaaccaattagaggaacaaaatgctccgacgaca
catgctcctcctgcaggtggctccaaaattatgtttgtgcgaggtacaaccaccaagagg
gaagatgaggttgcagatacagctcgtaccacaaatccagatgaaattgacattgatgat
gaggatgaaaatgatgatgatgatgatgaggaggaggaggatgatgatgatgatcttcct
caacaacgagaagtgccatcagcagtgtttggtcagttgaaaaaagattaa
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