Homarus americanus (American lobster): 121871100
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Entry
121871100 CDS
T07477
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD-like
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
hame
Homarus americanus (American lobster)
Pathway
hame03022
Basal transcription factors
hame03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hame00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121871100
09124 Replication and repair
03420 Nucleotide excision repair
121871100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hame03021
]
121871100
03036 Chromosome and associated proteins [BR:
hame03036
]
121871100
03400 DNA repair and recombination proteins [BR:
hame03400
]
121871100
Enzymes [BR:
hame01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
121871100
Transcription machinery [BR:
hame03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
121871100
Chromosome and associated proteins [BR:
hame03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
121871100
DNA repair and recombination proteins [BR:
hame03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
121871100
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
DEAD
ResIII
nSTAND3
SNF2-rel_dom
DUF5872
Motif
Other DBs
NCBI-GeneID:
121871100
NCBI-ProteinID:
XP_042229182
LinkDB
All DBs
Position
Unknown
AA seq
758 aa
AA seq
DB search
MLLDVDGMQVYFPYDFIYPEQYSYMLDLKRTLDAKGHCILEMPSGTGKTISLLALIVSYL
LAYPQNLTKLIYCSRTIPEIEKVIEELRKLLAYIEKENGEPCNITGLALSSRKHLCINPE
VNKARDGKLIDGGCHALTASYVRSRAQRDDTIPQCDFFEKFDLHGREFPLPAGCYNLDDL
REFGNQKGWCPYFLARHAVVQANVVVYSYHYLLDPKISEIVSKEMKREACVIFDEAHNID
NICVDSMSININRKILDKAKTCVTNLNEHVQRIKVSDSNRLQEEYNRLVAGLRQAASQQE
IIANPILPKDLLEENVPGNIRTADFFISFMRRLIDFLKMRLTVTHAVQESPAGILKDLKN
RAFIDRKPLRFCSERLSSIIRSLELTDISDLSPLIAVAHFATLVSTYMQGFVVIIEPFED
KAPNIPNPIMYLRCLDSSIAIKPVFTKFQSVVITSGTLSPLDMYPKILDFHPVIQNSFTM
TLARPCILPMIVTKGNDQVAISSKFESRDDPAVVRNYGKLLVEMARSVPDGMVCFFTSYL
YLENVVATWYDHGIISDLQRHKLVFIETQDDAETSLALVNYMKACDRGRGAILLAVARGK
VSEGIDFDHHYGRCVIMMGIPFMYTQSRILKARLEYLRDQFNIRESDFLTFDAMRHAAQC
VGRVMRGKTDYGIMLFADKRFARADKRNKLPRWIQEHLVDSKCNLSTEEAVQVTRPWLRQ
MAQPFTRDDQLGVSLLTLEQLNSAENIEKVQKRAQQSF
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgttgcttgatgtggatgggatgcaggtgtatttcccatatgatttcatttaccccgag
cagtactcatacatgttggacctgaaacggacacttgatgcaaagggtcactgtatattg
gagatgccttcaggaactgggaaaaccatttcccttcttgcattgatcgtctcttatctc
ttagcgtatcctcagaatcttaccaaactcatatattgctcccgaacaattccagagatt
gaaaaggtaattgaggaacttcggaagctgttagcatacatagagaaagaaaatggagag
ccatgcaatatcactggtttggctttgtcttctaggaaacatctttgtatcaatcctgag
gtcaataaggcaagagatggcaagttgattgatggtggctgccatgcactcacagcctcc
tatgtacgttccagggctcagcgggatgacactatacctcaatgtgacttttttgaaaaa
tttgatctccacggtagagagtttcctctccctgctggatgctacaatcttgatgacctc
cgagagtttggaaatcagaaaggctggtgcccctattttttagcccgacatgctgtagtg
caggcaaatgttgtcgtgtacagttaccactacctattagaccctaagatttcagaaatt
gtatcaaaagaaatgaaaagggaagcttgtgtcatctttgatgaagctcataatatagat
aacatttgtgtagattcaatgagcattaacatcaacagaaaaattttggacaaggctaaa
acatgtgtcaccaaccttaatgaacatgtacaaaggatcaaggtatctgatagtaaccga
cttcaggaagaatataacagactagtagcaggtcttcggcaggctgccagtcaacaagaa
attattgctaaccctattcttccaaaagatctcttagaagaaaatgtccctggaaatatt
agaacagcagatttcttcatatctttcatgcgtcgtttaattgacttcttgaaaatgcgc
ctgactgtgacacatgctgttcaggaatccccagcaggcatactcaaagaccttaaaaac
agagctttcattgatcgtaagccattaaggttctgctctgaacgtctttcttcaattatc
cgttccttagaattgacagatatcagtgacctttcacccttaatcgctgttgctcatttt
gccaccttagtgtccacgtacatgcagggttttgtagtaattatagaaccttttgaggac
aaggctccaaatattccaaatcccataatgtatttaagatgtcttgattcgtccattgcc
atcaagccagttttcacaaaatttcaatcagttgtgatcacatctggtaccctgtcacca
ttggatatgtatcctaagatcttagatttccacccagttattcagaattcattcaccatg
acattggctcggccatgtatcctcccaatgattgtgacaaagggcaacgatcaagtggct
atatcgtctaaatttgagtcacgagatgatcctgccgttgttcgtaattatggcaaactt
cttgtagaaatggcaagaagcgtacctgatggaatggtgtgcttctttacctcatacttg
tacctggaaaatgttgttgccacttggtatgatcatggcattataagtgacctgcagaga
cataagttggtgttcattgaaacacaagatgatgcagaaacttcccttgccctcgtcaac
tacatgaaggcctgtgatagaggacgaggagctattcttcttgctgttgcgagagggaaa
gtgtcagaaggaatagattttgaccaccattatgggcgatgcgtcatcatgatgggcatc
cctttcatgtatacccagagtcgaattctgaaggccagactggagtatttgcgtgaccaa
ttcaatattcgagaaagtgactttctgacttttgatgccatgcgtcatgctgctcagtgt
gttggacgagttatgcgtggaaagaccgattatggtattatgctcttcgcagacaaacgt
tttgctcgggcagataagcgaaataaattgccaagatggatccaagaacatttggtagat
agtaaatgcaacctttctacagaggaagctgtgcaggtaacaaggccgtggctaaggcag
atggctcagccgttcacccgagatgaccagttaggagtgtctcttctcactcttgaacaa
ctgaactctgcagaaaatattgagaaagttcaaaagagagcacagcagtccttttga
DBGET
integrated database retrieval system
