Homarus americanus (American lobster): 121872509
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Entry
121872509 CDS
T07477
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog isoform X1
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
hame
Homarus americanus (American lobster)
Pathway
hame04140
Autophagy - animal
hame04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
hame00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121872509
04148 Efferocytosis
121872509
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hame04131
]
121872509
Membrane trafficking [BR:
hame04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
121872509
Hops complex
121872509
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_N
VPS11_C
zf-C3HC4_2
Clathrin
zf-RING_2
TPR_Vps41
zf-C3HC4
zf-C3H2C3
zf-rbx1
Beta-prop_WDR36-Utp21_1st
Beta-prop_IFT140_1st
zf-RING_5
Beta-prop_WDR3_1st
zf-RING_UBOX
Beta-prop_EML_2
NPF
Motif
Other DBs
NCBI-GeneID:
121872509
NCBI-ProteinID:
XP_042231231
LinkDB
All DBs
Position
Unknown
AA seq
1213 aa
AA seq
DB search
MAALLQWRRFGFFDVKANIDSGKLAEAVKDSDVTCTAAGRGHVYVGDSSGWVHSLTRQLK
LESFQAHDRAVNSITTFDHASVIITVAEKSDGTSEIKVWAPDKPDVHGHPVCLRTLCPDP
RPPHAGSRSSSVPQQAVKMPKVTAIAVHPNLSLMAVGFSDGAIMLYRGEVSRERGSKHRV
LLTVSSGITSLHIRHTTRSTHLFVTSHTNIYCINCTVRDKETTVELDSVGCQPGCATLAD
GRHEHHLLVARPDAIYSYTSDSRGSCYVFEGEKSLVAWFRGYLIVAAADKGVPASRASER
SITIYDLTNKLVALSTRVQGLAGAVGEWGGLYLVTTEPSLIHMSEKDLHSKFQLLFKKNQ
FDIAISLAKTQCCDQEEVAEILRQYGDWLYSKGNHPIAMDQYIKTIPHLEPSYVIRKYLD
TQHINNLTTYLQALHKSGSATADHTSLLLNCYTRLRDTQQLDEFIMSKDGAVDCDVELGV
RVCRSAGYYDHALALAAKHSLHHHHLAILIDDKKDYVAALRYISTLELEEAKANVLRYGS
VLLSHVADETTELLIRLCTDYKPTNSPIIKEGSLDGYLTPEEPVYADPEDFEYMLVGHSE
QAIMFLEKMATIPGKLSIKLYTTLLAEYLHQYSLAPEGQEQVALGEKVMELLRSSDNEYC
RDHALLLCDKHKFHDGKLLLWEQAGMYEELLAWYAELGDMDSMLAVCFRKSQQQPRLWCS
ALKLLTSESSLTPPDPQHLMNCLNNIEQKGLLPPLEVVDQLATSPHISLGQVREYLLRVV
STHSATLASETTRTQQYSEETARMRETIRELRTSATPFTATKCNICNNELELPSVHFLCR
HSFHQHCFESYSESDSECPVCLPENKKMLEVIRAQCYGVILPLQETHRSQHDQFHEQLER
STDSFSVVADYLGRGVFTHLHSLAAMYPPLNTTKNQSKVVPKAAAATNVGQDVADSGSEA
RIRTTEFRPKLSKGLVVPEPEGRLRALERVSQEPVGVGGEGRLRMSERHGQGVMKSEPEG
RLRTEGRGGIAKFPSDGTSKAMNAPAEGRVRQENPSDILTSPTEGRLRSGITSSMAVPTA
ESRIRANEAKRMGGGAGKFSPSLHDHITGSPTPALDRDLKKTSPVESISTALTGTHISRP
KTLTDNPFQEDNASVSNPFGDDFETEHMENNPFAEEYDESKNPFAEDSPRNMTPGDINPF
AKDDYESQLNPFG
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atggcagcactactccagtggaggcggtttggcttcttcgatgttaaggccaacattgac
agcgggaaattagcggaagcagtgaaggattcagatgtaacatgtacggcagccggcaga
ggtcacgtatatgtgggggactcgagtgggtgggtccatagcctcacacgacaactaaaa
ctagagtcattccaagcacatgatcgagcagttaactcgatcactacgtttgatcatgcc
agcgtcatcatcactgtagccgaaaagagtgatggcacctcagagatcaaagtgtgggct
ccagacaagccagatgttcatggtcatccagtatgtctgcgaaccctctgcccggacccg
aggcctcctcatgctgggtctaggtcaagctcagtacctcaacaggcagtaaagatgccc
aaagtaactgccatagctgttcaccctaacttgtccctgatggctgtggggttttctgat
ggtgcaataatgctctacagaggtgaagtgagtcgtgaacgaggtagcaaacatcgggtc
cttttgacagtttccagtggcatcacatctctacacatccgccacaccacacgctcaact
cacctcttcgtcaccagtcacaccaatatttactgcataaactgtactgtcagagacaaa
gaaactactgtggagctagactctgtggggtgtcagccgggctgtgcaactctggcagat
ggtcgacatgagcatcacttattggtggccagacctgatgcaatatacagttatacaagt
gacagtagaggatcgtgctatgtctttgagggagagaagtcgttggttgcatggtttagg
ggataccttattgttgcagctgctgacaaaggggtaccagccagcagagctagtgaacga
agcatcacaatctatgacctgaccaacaaattagtagcattaagtaccagagtacaagga
ttagctggtgctgtgggagagtggggaggcctctacctagtgaccacagaaccttccttg
atccacatgtctgagaaagatctgcacagcaaattccaactccttttcaagaagaaccaa
tttgatatagctataagtctggccaagacccagtgttgtgaccaggaagaagtggcagag
atcttgcgacagtatggagattggctatacagcaaagggaaccacccaattgccatggat
cagtacatcaagaccatcccccaccttgagccttcctatgtcataaggaagtatttggac
acgcagcatattaacaacttgactacatacctgcaagcattacacaaatctgggtcagcc
actgccgaccacaccagccttctgctcaactgctacacacgtttacgagacacacagcaa
ctggatgaatttatcatgagcaaggacggcgctgttgactgtgacgtggagcttggtgtg
cgtgtgtgccgtagtgcaggttactatgaccatgctcttgccctggcagccaaacacagt
cttcatcaccaccatttagcaatcctaattgacgacaagaaagattatgtggctgcttta
agatacatttcaacactggaattggaagaagctaaggccaatgttttgcgttatgggtca
gttctgttgagtcatgtggcggacgagactacagagctgttgatcagactctgtaccgac
tataaaccaactaattcacccatcattaaagagggatctttggatgggtacctcacccca
gaggaaccagtatatgcagatcctgaagactttgagtatatgctcgtaggccacagtgaa
caagccatcatgttcctggagaagatggccaccatacctggcaaactctccatcaagtta
tacaccactttgttggccgaatacctacaccagtacagtcttgctcctgaaggtcaggaa
caagtggcactaggggagaaggtgatggaacttttacgcagctcggataacgaatactgt
cgagatcatgcgctgctgctgtgtgataagcataagtttcatgatggaaagctccttctg
tgggaacaagctggaatgtacgaggaattgctggcctggtatgccgagcttggagacatg
gacagcatgttagccgtctgttttaggaagtcacagcagcagcctcgtctctggtgttca
gccttgaaacttctcacatcagaatcgtctctcactcctcctgatccacaacacctcatg
aactgccttaataatatagagcaaaagggtttactgccaccactggaagtagtggaccaa
cttgccacatctccacacatctccctgggccaggtacgagagtacttgctgagggtcgtg
tccacccactcggccacccttgcctccgagactacacgcactcagcagtattctgaggag
acggccaggatgagggagaccatccgtgagctaagaactagtgccacgccgttcacagcc
acaaaatgcaacatctgtaacaatgaattggagctgccgtctgtacacttcctctgtagg
cactccttccatcaacattgttttgagagctacagtgagagtgactctgagtgccctgtc
tgtttacctgaaaacaagaagatgctggaagttatcagagcacagtgttatggtgtgatt
ttacccttacaggagactcaccgcagccagcacgaccaattccacgaacagttggaacga
tcgacagactcgttctccgtggttgcggactacttgggacgaggggtgttcactcacctt
cactccctggcagccatgtatcctccgctcaatactactaaaaaccagagtaaagttgtc
cccaaagcagctgcagctactaatgtaggccaggatgtggcagactctggctcagaggcc
cgcattagaaccactgagttccgtcccaagctcagcaaggggctggttgttcctgaacct
gaggggagattgagagcattagaaagggtgagccaggaaccagttggtgttggtggggaa
ggtcgactgaggatgagtgagcgtcatggacagggggtaatgaagtcggaaccagagggc
cggctgcgtacagagggtcgtggtggaatagcaaagtttccttcagatggcacttcaaaa
gccatgaatgctcctgcagaaggaagagtgcgtcaggaaaacccaagtgatatattgaca
agtcctacagaaggtcggttgagatctgggataacttcaagcatggccgtccccacagct
gaaagtagaataagagccaatgaagctaagagaatgggaggcggtgccggtaaatttagc
ccgtccctgcacgaccacatcacggggtcacccacgcctgccctagacagagacctcaag
aaaacctcccctgtggaaagcatatcaacagctcttaccggcactcatatttcacgaccc
aagactttgaccgacaacccatttcaggaggataatgctagtgtttctaatccatttggt
gatgactttgagacagagcacatggaaaataatccttttgcagaggagtatgatgaatcc
aaaaacccatttgcagaagactcccctagaaatatgactcctggtgatataaacccattt
gccaaagatgattatgaatctcagctgaatccttttgggtaa
DBGET
integrated database retrieval system
