Homarus americanus (American lobster): 121873001
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Entry
121873001 CDS
T07477
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
hame
Homarus americanus (American lobster)
Pathway
hame04140
Autophagy - animal
hame04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
hame00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121873001
04148 Efferocytosis
121873001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hame04131
]
121873001
Membrane trafficking [BR:
hame04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
121873001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CNH
Vps39_1
zf-Vps39_C
Clathrin
TPR_Vps41
Beta-prop_RIG_2nd
Lgl_C
Motif
Other DBs
NCBI-GeneID:
121873001
NCBI-ProteinID:
XP_042232168
LinkDB
All DBs
Position
Unknown
AA seq
886 aa
AA seq
DB search
MHDAYEAIPILEKLPLQIEAVTAYDGNLVVGTRQGHLLMYTVTPGTTRRWDVALLCSNKN
FSRKPIVQVAVIPEHQIIVSLSDNVVSVHDLTAFNLPLLCTLSQTKGATAFDLDIKHHVS
LTGDGVVTVRLVVAVRRKLQLFYWKARKFHQLREDLALPDVPRALTWCMEAIAVAFKHEY
WLVKLTGEQKELFATGRSQEPLITRMVDGEQLALAHDKESIFVDADGNATCSYTLKWVEQ
PLSLAYDKPYLIAILPKNIEIKTTEPQITVQVLNLDKPKLLAVGQSTKGKSQVYIASSSH
VWCLHSIPINQQIPQLLGEKQFGLALKLVDVWDEDEDAKTQMQKHIQHLQAIHLFCSKSY
PDAMKLFFTLNTDLPFVIGMYPDMVPEEYRSRLRYPYPIPALSGADLEQALQALIHFLLE
MRHQLCSSDSEARTEDVGDNKFSSSAAVAASLKSRNEKLQIIDTTLLKCYVQTNDSLVQP
LLRMRDSRVSVVEGERVLRHSHKYPELVLLLQTRGLHQRALQLLIRHAKRPDSPLCGHQH
TVNYLQHLGPQHIDLIFEYGGWVLKSHPEDGLKIFIGDKSTSGEVDQLPRPKVLNFLKKT
EKTLVIPYLEHVLQEWGDTTPLLHNELIHQYRDIVVAPFTSSDPANVEEEKGRRKIVCEK
LLKFLNESKYYTAATLLIHFPYDGLHEERAVLLGRLGQHHQALSIYTNTLRDTQAALRYC
QKHYTPSGPGSEVYLTLLKLLVSPIDIRSTSGSPVMQQQQQAGKPDVETVLELLQNHLHC
IDLGQALKVLPDEVTLNLLKPFIHASFNLASSVCKQKQIMRGLTQSLKLQTSEELVARQK
LKIMLSEYTYCAVCSKRFTKHSAFAWYPNGDIVHFSCQNQSVCWVH
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgcatgatgcttatgaggccattcccatcctggagaaacttccactacagattgaagct
gttacggcttatgatggtaacttagtggtggggacgagacaaggccacctgctcatgtac
acggtgactcccggcaccacgcgacgctgggacgtggctcttctctgctccaacaagaac
ttctcacgcaagccaatagttcaggtggctgttatccctgaacaccaaatcattgtgtca
ttatcagataatgttgtaagtgtacatgatctgacagccttcaatttgcctctactctgt
acattatcccagactaaaggtgctactgcctttgatcttgatattaagcatcacgtgtcg
ttgacgggggatggcgtggtcactgtgcgtctggtggtggccgtcagacgcaagcttcag
ctcttctactggaaagccagaaaatttcatcagcttcgcgaagatctggccttaccggat
gtgccccgagctttaacctggtgcatggaagctattgctgtagcctttaaacatgagtat
tggctggtcaagctgacaggtgaacagaaggaactgtttgccaccggtcgcagccaagag
cccctcataactagaatggtggacggggagcagttagctttggctcatgacaaggaatct
atctttgttgatgctgatgggaatgccacttgcagttatacacttaagtgggtagaacaa
ccactttctctagcatatgacaaaccatacttgatagccatcttgcctaagaatatagaa
ataaagacgacagaacctcaaattactgtacaggtcctcaacttagacaaacccaagctc
ctggctgtggggcagtcaaccaaagggaagagtcaggtgtacatagcgtcgtcatcacat
gtctggtgtttacactccatccccatcaaccaacagattccgcaactcctcggagaaaaa
caattcgggttggcgctgaaacttgtggatgtctgggatgaagatgaggatgccaagact
cagatgcagaaacacatccagcacctacaagctattcatctcttctgtagtaaaagttac
ccagatgccatgaaactcttcttcactctcaacacagatcttccatttgttattggcatg
tatccggacatggttcccgaggagtaccgtagccgactccgttacccgtaccccatcccg
gcactcagtggagcggacttagagcaagcactccaggctctaattcacttcctgttagag
atgcgtcatcagctgtgtagcagtgatagtgaagctcgcactgaagatgtcggtgacaac
aagttctcctcttcggcagctgtggcggcaagtttaaagtctcgcaatgagaaactccag
atcattgacacaacattgttgaagtgttatgtgcagaccaatgacagccttgttcagcct
ctgcttcggatgcgtgatagccgtgtgagtgtagtggaaggggagcgcgttttacgccac
tcccacaagtacccggagctcgtcctgctgctacagactcgtggtcttcatcaacgagct
cttcaactgttgatcaggcatgctaagagacctgactcacccctgtgtggccaccaacac
actgtcaactatttacagcatcttggacctcaacacatagatctaatatttgagtatggg
ggctgggtgttaaagtcacaccctgaagatgggttgaaaatatttattggggacaagtca
acgtcaggcgaagtggatcagctgccacgacccaaagttctcaattttctcaagaaaaca
gagaaaactcttgtaatcccatatttggaacatgtactacaagagtggggggacacgaca
cctttactacacaacgaactcattcaccagtaccgtgatatagtggtggcaccttttact
tctagtgacccagcaaatgtggaggaggagaagggaagaagaaaaattgtgtgtgagaaa
cttctaaaattcctcaacgaatccaagtattacacagcagcgactctccttattcatttt
ccttatgatggtctccacgaagagcgagccgtgctgttggggcgtctcggtcagcatcat
caggcactgtccatctacaccaacacactcagagacacacaggcagccctcaggtactgc
cagaagcactacaccccttcaggacctggcagtgaggtatatttgacactcctcaagctg
ctggtcagtcctatagacataagaagtacttctggttccccagtcatgcagcaacagcag
caggcaggaaaaccagatgttgagactgttctcgaactgctacagaatcatctacattgt
atagatcttggccaggcgctgaaggtgttaccagatgaagtaacactcaacttgttgaag
ccttttatccatgcatcatttaacctggctagttcagtgtgtaaacagaagcaaataatg
cgaggtctcacacagtcactcaaactccagacaagcgaagaacttgttgcccgccagaaa
ctgaagatcatgctgtcagaatacacctactgtgctgtgtgtagtaaaaggttcactaaa
cacagtgcatttgcttggtatccaaatggtgatattgtacacttctcctgccagaaccag
agtgtttgctgggtacattga
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