Homarus americanus (American lobster): 121873163
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Entry
121873163 CDS
T07477
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
hame
Homarus americanus (American lobster)
Pathway
hame03020
RNA polymerase
hame03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hame00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
121873163
09124 Replication and repair
03420 Nucleotide excision repair
121873163
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hame03021
]
121873163
03400 DNA repair and recombination proteins [BR:
hame03400
]
121873163
Enzymes [BR:
hame01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
121873163
Transcription machinery [BR:
hame03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
121873163
DNA repair and recombination proteins [BR:
hame03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
121873163
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
EutB
Motif
Other DBs
NCBI-GeneID:
121873163
NCBI-ProteinID:
XP_042232423
LinkDB
All DBs
Position
Unknown
AA seq
1909 aa
AA seq
DB search
MTGLDSKAPLRGVRRVQFGILSPDEIRHMSVTEGGIKYSEVYENGRPKLGGLMDPRQGCL
DRNTRCTTCAGNMTDCPGHFGHLNLAKPVFHVGFLTKTVKIIRCVCFYCSKLLFNTQHPK
IREIVTKSKGQPRKRLLHVYNLCKGKMICEGGDEVDITKDPDDPTKIKKTQGHGGCGRYQ
PNVKRVGLELVAEWKHVNEDTQDRKQSVTAERVHEIFRHISDEDCYLLGMDPKFARPDWM
IMTVLPVPPLPVRPAVVMYGSARNQDDLTHKLADIIKSNNELIRNEQSGAAAHVIAENIK
SLQFHVATMTDNDMPGMPRALQKSGRPLKALKSRLKGKEGRIRGNLMGKRVDFSARTVIT
ADPNLRIDQVGVPRSIAQNLTYPEIVTPFNITKMMELVKRGNNQYPGAKYIMRDNGARID
LRYHPKPSDLHLQCGYKVERHITDGDLIIFNRQPTLHKMSMMGHKVKVLPWSTFRMNLSV
TSPYNADFDGDEMNLHVPQSMETRAEIENLHLTPRMVVTPQSNRPVMGIVQDTLTAVRKM
TKRDVFLDKAEMMNLLMFLPIWDGRMPHPAILKPKPLWTGKQLFSLIIPGNLNLVKTHAT
HPDDEDDGPYKWISPGDTKVLVEHGELIMGILCKKTLGASSGSMMHLSWMELGHEIAGRF
YGNIQTVVNNWLLLEGHSIGIGDTISDPNTYRVIQDTIKKAKEDVIEVIHKAHNDELEPT
PGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACV
GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLI
DTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVSQVIQLRYGEDGLAGEFVEFQNLPT
IKLSNRRFDDRYRFEASNERYLRKLFTEEVVREILGSPDAINILEGEWQHLQEDRQTLRQ
VFPKGDTKVVLPCNLERMIWNVQKIFHINKRTQTDLSPVRVVESIQTMLDKCVIVSGNDR
ISKQANENATFLFQCLVRSTLCTKKVAEEYKLTTEAFNWLIGEIETRFNQATAVPGEMVG
ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLVGAAA
RDAEKAKNVLCRMEHTTLKKVTSNTAIYYDPDPQNTVVAEDQEFVNVYYEMPDFDVSRIS
PWLLRIELDRKKMTDKKLTMEQISQKINSGFGDDLNCIFNDDNAEKLVLRIRIIVGDDKL
TDEPEEQVDKMEDDTFLRCIEANMLNDLTLQGIESISKVYMHLPQTDEKKRIIINEPGEF
KAIAEWLLETDGTALMKVLSERDVDPIRTSSNDILEVFEVLGIEAVRKCIEKEMNAVLMF
YGLYVNYRHLALLCDVMTSKGHLMAITRHGINRQDTGALMKCSFEESVDVLMEAASHAEV
DPIRGVSENIMLGQLPKIGTGAFDLVLDDEKCKLGMEVPMPGAAMMLPGSIFSEASPSSG
MTPAQTPWASNSTPSMSPYGGWTPGVGSGMTPGGPAFSPATAAETTGLSPGYSPAWSPQP
GSPGSPGGMSPYFPSPASAVSPSYSPSSPAYQPTSPSLTPASPGYSPTSPTYSPTSPQYS
PASPQYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSSPSTPQPYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYAPNYSPSSPGYSPTSPSY
SPTSPSYSPTSPQYSPASPSYSPTSPKYSPTSPNYSPTSPTYSPGSPSYSPTSPKYSPTS
PTYSPTSPSYSPSSPKYSPTSPNYSPTSPKYSPTSPTCSPSSPQYSPTSPKYSPTSPTYS
PSSPKYSPTSPTYSPSTPGYSPSSPVYSPSLAEDDEEDRQKKQKKKNKR
NT seq
5730 nt
NT seq
+upstream
nt +downstream
nt
atgacagggttagacagcaaagcgcccctcagaggagtaaggagagttcaattcggcatt
ctcagtcccgatgaaattcgtcacatgtcagtcaccgaaggaggcatcaaatactcggag
gtgtacgagaacggccgcccgaaattaggtgggttgatggatcctcgccaaggttgtcta
gatcgtaacacccgctgtacgacctgtgccggcaacatgaccgattgtccaggtcacttt
ggtcatcttaatctggccaaacccgtctttcatgtgggtttcctcaccaagactgtcaag
attatccgctgtgtgtgtttctactgtagcaagctgttgtttaatacgcaacaccccaag
ataagagagatcgtaaccaagtcgaaaggtcagcccaggaagagactgttacacgtgtac
aatctttgcaaggggaagatgatctgtgaaggaggggacgaggtggacataaccaaggac
ccagacgacccaaccaagattaagaaaacgcaaggacatggtggttgtgggaggtatcaa
cccaatgtgaagcgagtgggccttgagctggtagcggagtggaaacacgtcaacgaggac
acgcaggatcggaaacagtccgtcacggcagagagagtccacgagatattcaggcatatc
tctgatgaagactgttacttgctggggatggatcctaagttcgcccgccctgactggatg
atcatgacagtactgcccgtgccgccgctgccagtccgaccggccgtggtgatgtatggt
tcagcccgtaaccaagacgacctcacgcacaaactcgcagacatcatcaaatccaacaat
gaactgatccgtaatgaacagtctggcgcagccgctcacgtcatcgcggagaacatcaag
agcttacagtttcacgtcgctaccatgacggataacgacatgcccggtatgcccagggct
ctgcagaaatctggacgtccgctcaaggctctcaaatcacgcctgaagggtaaggaaggc
cggatacgaggtaacctgatgggtaagagagtggatttctccgcccggacggttatcaca
gccgaccccaacctacggatcgaccaagtgggagtccctcgctccatcgctcagaacctc
acctacccagagattgtcacacccttcaatatcaccaagatgatggagctggttaagaga
ggtaacaatcagtacccaggagctaaatatataatgagggataacggtgcccgtattgac
ctccgctatcacccaaaaccctccgacctccaccttcagtgtgggtataaggtggagcga
cacattaccgacggtgacctgatcatcttcaacaggcaacctaccctacataaaatgtcc
atgatgggtcacaaggtcaaggtgttaccgtggtccaccttccgcatgaacctatccgtg
acgtcgccatacaacgcggacttcgacggggatgaaatgaacctccacgtgcctcagagt
atggagacccgcgcggagatcgagaacctccaccttacccccagaatggtcgtcaccccg
caatctaatagaccagtcatgggtattgtgcaggacaccctaactgctgtccgtaagatg
accaagagggacgtgtttcttgataaggctgaaatgatgaacctcctcatgttcctgcca
atctgggatggccggatgcctcacccggccatactcaaacctaaaccgctgtggacaggc
aagcagctcttctccctcatcatcccaggtaacttgaacctggtgaagacccacgccact
caccctgacgacgaggacgacggcccctacaagtggatctctcctggggacaccaaggtg
ctggtggaacacggggagctcatcatgggtatcctgtgtaagaagacccttggggcttcc
tcggggtccatgatgcacttgtcatggatggagctgggtcatgagatcgctggtcgcttc
tacggtaacatccagactgtggtcaacaattggctactgctggagggtcacagtattggc
atcggtgacaccatctccgaccccaacacctacagggtcatccaggacaccatcaagaag
gccaaggaggacgtgatagaggtgatccacaaggctcacaacgacgagctggagcccaca
cccggcaacacactcaggcagaccttcgaaaatcaggtcaatcgcatcctcaacgatgcc
cgtgacaagactggaggctctgccaagaagtcgttgacggagtataacaacctgaaggcc
atggtggtggcagggtccaagggctccaacattaacatctctcaggttattgcttgtgtg
gggcagcagaatgttgagggtaagaggattcccttcggatttcgcaagagaacattgcct
cacttcatcaaagatgactacggtccagaatctcgtggtttcgtagagaattcctacctg
gccggccttacaccctcagagttctactttcatgccatgggaggtcgcgagggtctaatt
gataccgccgttaagaccgccgagacgggctacatccagcggcgcctgatcaaggccatg
gagagtgtgatggtcaactatgatggcacggtgaggaacagtgtcagtcaggtgatccag
ctcaggtatggagaggacggccttgcgggagagttcgttgaattccagaatctgcccact
atcaaactctccaatcgacgttttgatgatcgctatcgcttcgaagcgtccaacgaacgc
tacttgaggaagctcttcacggaggaggtggtgcgagagatcctgggctcccctgacgcc
atcaacatcctggagggtgagtggcagcatctgcaagaggacagacagaccctccgacag
gtcttccccaagggtgacactaaggtggtgttgccgtgtaacttggagcggatgatctgg
aacgtgcagaagatcttccacatcaacaagaggacccagacagatctatcacctgtgcgg
gtggtggagagtatccagacgatgctggataagtgtgtcattgtgtccggcaacgaccgc
atcagcaagcaggccaatgagaatgccaccttcctgttccaatgtttggtgaggtccaca
ctgtgcaccaagaaggttgccgaggaatacaaactcaccacagaggctttcaactggctt
ataggagagatcgagaccagattcaaccaggccaccgcagtgccgggagagatggtgggt
gccctggctgctcagtccctgggagaacctgccacacagatgaccctcaacactttccac
ttcgccggcgtctcctccaaaaacgtaaccctgggtgtgccccgcctcaaggagatcatc
aacatcagcaagaaacccaaggcgccctccctcaccgtgttcctggtgggcgccgctgcc
agggacgccgagaaggccaagaatgtcctgtgtcgcatggagcacaccaccctcaagaag
gtgacctcgaacacagccatctactacgatccagaccctcagaacacagtggtggcggag
gaccaggagtttgttaatgtctactatgagatgcctgacttcgatgtttctaggatctcc
ccctggttgttgaggattgaactggataggaagaagatgacagataagaagttgacaatg
gaacaaatctcccagaagatcaactcagggttcggcgacgacctcaactgtatcttcaac
gatgacaacgctgaaaaactggtactgaggattcgtattattgtgggcgatgacaagttg
actgacgaacccgaagagcaggtggacaagatggaggacgacaccttcctgaggtgtatt
gaggcgaacatgctgaacgacctcaccttgcagggcatcgagtccatctccaaggtgtac
atgcacttgccacagaccgacgagaagaaacgaatcatcatcaacgaacctggtgaattc
aaggccatagcagagtggttgttggagactgacggcacagcactcatgaaagtcctctct
gagcgcgacgtcgatcccataaggacgtcctccaatgacatcctggaggtattcgaggtc
ttgggaatcgaggcggtgaggaagtgtatcgagaaggagatgaacgccgtcctcatgttc
tacggtctgtacgtcaactaccgacacctggctctgctgtgtgacgtcatgaccagcaag
ggccacctcatggccatcacccgccacggcatcaacaggcaggacaccggagccctcatg
aagtgctcttttgaggaatccgtcgacgtgttgatggaggctgcgtcacatgcggaggtc
gaccccatccgtggcgtctcagagaacatcatgctgggtcaactaccgaagattgggact
ggagcctttgacctggtactcgatgacgagaaatgcaaactgggcatggaggtgcccatg
cccggggcagcaatgatgctccccggcagcatattcagcgaggcatcaccctcctcagga
atgacgcccgcccagaccccatgggcatctaactctacaccctccatgtcgccatacgga
ggttggacgcctggagtgggcagtggcatgactcctggtggtccggctttctcccctgca
actgccgctgaaaccactggtctctcccccggatactccccagcttggtccccccagcca
ggcagtccggggtccccaggaggcatgagcccttacttccccagcccggcgagtgctgtg
tcaccgtcgtattcaccctcctccccagcctatcaacccacctcacccagcctcacccca
gcatctcctggctactccccaacatccccaacctacagccccaccagcccccagtactcc
ccagcctctccccagtactcccccacaagcccctcatacagtccaacctctccctcctat
tccccaacctccccttcttactccccaacctccccttcttactccccaacctcctcccct
tccactccccaaccttactctccaacctctccatcttactccccaactagtccttcctac
tccccaacctccccaagctacagtcccacttccccctcttactccccaaccagtccttcc
tactccccaacctcaccatcttactccccgacatctccgtcatattcgccaacctccccg
agctatgcacccaactactccccatcatccccgggctactccccaaccagtccttcttac
tccccaaccagcccctcatactccccaacttcaccgcagtactcaccagcgtcaccctcc
tactctccaacttctcccaaatactccccaacgagcccaaactactccccgacaagtccg
acttactcccccggttcgccgtcctactccccaacatcacccaagtactccccaacgagc
cccacttactcgccgacctcgccatcctactccccatcttccccaaagtactcgccaacc
tctccgaattactcgccaacttcgccaaagtattcgcccacttcgccaacatgcagcccc
tctagtccccaatacagcccaactagtcccaaatattccccaacctcacctacttatagt
cccagcagtcccaaatattccccaacttccccaacttacagccctagtactcctggttat
agcccctcctccccagtctactccccaagtctagctgaggatgatgaggaagatcgacaa
aagaaacaaaagaaaaagaataagcgctaa
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integrated database retrieval system
