Homarus americanus (American lobster): 121876378
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Entry
121876378 CDS
T07477
Name
(RefSeq) THO complex subunit 5 homolog
KO
K13174
THO complex subunit 5
Organism
hame
Homarus americanus (American lobster)
Pathway
hame03013
Nucleocytoplasmic transport
hame03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hame00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121876378
09122 Translation
03013 Nucleocytoplasmic transport
121876378
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hame03019
]
121876378
03041 Spliceosome [BR:
hame03041
]
121876378
Messenger RNA biogenesis [BR:
hame03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
121876378
Spliceosome [BR:
hame03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
121876378
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
DDE_1
DDE_3
Motif
Other DBs
NCBI-GeneID:
121876378
NCBI-ProteinID:
XP_042237383
LinkDB
All DBs
Position
Unknown
AA seq
1016 aa
AA seq
DB search
MQQRLKQAVLLEKPRELAKVASSGWFSGFKNRYAFHNVKLCGEAASADEASARAFPPTVK
KLIQEEGYTLDQIFNLDETGLYWKCMPTRTYISKNEAHAPGFKAAKDRVTVLLGANASGD
LKLKPVLVYHSVNPRALKGYIKSTLGIHFRSSKKGWMTGQIFSDLLVDVFENVFKKYCKK
KNIDFKILLILDNAPSHPPTVAELSDNIKVLFLPPNTTSLLQPMDQGVIAAFKAYYLRRT
FKKLIEATEEGNDKASVLQFWKKFNMKHAIDIIVEAWVEVSKDCLSGVWRKLLPNLIHDF
TGFDASEELPKITENCVSLAKQVSFAEVESADVEELLESHCEDLSTEDLQQLVDSGKIED
AEDEEVQDAKPRELPTSVLSSILREVDTQLQRLEDNDYNAERSRIAVRVRDSREKTAEAR
QSVDGVTLQLQNLLYEVAHLKKEVRRCLDFQSADQEIDLVPVEQFYVEAPEYISRPADTV
EDPHEQRLARLQWELEQRRDQTQLFDKLTQEKEAVAETINEQERKLASLAPRINAILEAT
RPLQDALDLPIDAKREQQRIVQLLPSPLYTLWVQASAYGEAFDPFIKVEVFGDVDAAKKL
IVKEEDTRTENLSESDNDQDQQEENLSRKKRNRKSQKLDAEDLDDGVKQMLGLHPLFVKI
NVNTKEGNSVVITFYYMQTLRIVTAKCSVHLQEKTKCALTDVISGDTLLNCLVPDDDGQT
SPNPANFFQLNRLRINLSDHLSATGRPYKWAQSLSGLSFSSSKQTHVSGEDSQDTSTGAG
SSLGDGEMVVWQDSAEQMPHTIQAIRRRLQARLALHAQLVNLETANSTSSIAIPAELLRQ
HFPGKVCSELKSWRPVTWADYEASSSTQLLREIQVVTPQHLLFMALFDRKHVRLEALVAV
SPDHPIKVPVVALSLYWEDHFQTANSPQLRLMEKEVNVHWDELVSSRSDRLHLLPLILYR
LAVCLDVYTEAYSAHADARGPDAQFHKEKIFFRPARGPDRAFPFKYHPKLGVFSQR
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaaagattaaagcaagctgtgttgctggaaaaaccaagagagctagcaaaagtt
gctagtagtggatggttttctggttttaagaaccgctatgcttttcataatgtaaagtta
tgtggtgaagccgcaagtgccgacgaagcaagtgcccgggcatttcctcccactgtaaag
aaattgattcaggaagaaggctacaccttagaccaaatttttaatttggatgaaacaggt
ttatactggaagtgcatgccaacaagaacttacatttccaagaatgaagcacatgctcca
ggctttaaggctgcgaaggaccgtgtgacagtgttgttgggtgcaaatgctagtggagac
ttaaagcttaagcctgtgttggtgtatcactctgtcaacccgcgagctttaaagggttac
ataaagtctactctaggtattcactttaggtcaagcaaaaaaggttggatgacgggacaa
attttttctgaccttcttgtggatgtttttgaaaatgtgtttaaaaaatattgcaagaag
aagaatatagattttaagattctcctcattttagataatgcaccaagccaccctcccact
gttgctgagctttctgacaatatcaaagtgctctttctacctccaaatacaacatctctc
cttcaaccaatggaccaaggagtaatagcagccttcaaagcctattatttgaggcgtaca
tttaagaaacttattgaagctactgaggaaggaaatgataaggccagtgttcttcagttt
tggaaaaaattcaacatgaagcatgcaattgacatcattgtggaggcctgggttgaagta
agtaaggactgcttgagtggagtttggcggaagcttctcccaaatttaattcatgatttt
acaggctttgatgcatcagaggagctcccaaaaattacagaaaattgtgtttctcttgca
aagcaagttagctttgctgaagtggaaagcgctgatgttgaagaactgctcgagtcccac
tgtgaagacctctctacagaagatctacaacaacttgttgattctgggaaaatagaagat
gccgaagatgaagaagtccaggatgcaaaaccacgagagcttcccacttctgttttatct
tctatcctgagggaagttgatacgcagttgcagcgcttggaagacaatgactacaatgca
gaaaggagcaggattgcagttcgtgtacgtgattcccgagagaaaacagctgaagctcgg
caaagtgttgatggagtgaccttgcagttgcagaaccttctatatgaagtggcgcatctg
aagaaagaagttcgacgttgtcttgattttcagtctgctgatcaggaaattgatcttgtg
cctgtggaacaattttatgttgaggctccagaatacatcagtcgacctgctgatactgtg
gaggatccacatgagcagcgtttggctcgtcttcagtgggagttggagcagaggcgtgac
cagacacagctgtttgacaaacttactcaggaaaaagaggctgtggcagaaaccataaat
gaacaggaacgcaaactagcatcattggctccaaggatcaatgccattttggaagcaact
cgtccattacaagatgccttggacttacccatagatgctaagagagaacagcagaggata
gtgcagcttttaccaagtcctctctacacactctgggttcaggcatctgcatatggtgaa
gcttttgaccccttcattaaagttgaagtctttggagatgtcgatgcagccaagaaactc
attgtaaaagaagaagatactcgaactgaaaacctgtcagagtcagataatgatcaagat
caacaagaggagaatctttcccgtaagaagcgcaatcgtaagtcccagaaattggatgca
gaggacttggatgatggagtgaagcagatgctaggcttacatccactctttgtaaagatt
aatgtaaacacaaaggaaggtaacagtgttgttattacgttttactatatgcagacctta
cgcattgtgactgctaaatgttcagtgcatcttcaggagaaaaccaagtgtgctctgaca
gatgtgatcagtggagatacacttttgaactgcctcgttcctgatgatgatggacaaacg
tcaccaaacccagctaacttctttcaactgaaccgccttcgtataaacctctctgatcac
cttagtgccactggtcgaccttacaagtgggctcagtctctctcagggttatcattttca
agttccaaacaaacacatgttagtggggaagactcgcaggatacatcaacaggagcagga
agctctcttggtgatggtgagatggtggtgtggcaagatagtgctgagcaaatgccccac
accattcaggccatccgtcgcagactacaagccagactggctttacatgcccagctggta
aacctcgaaactgccaattcaactagctcaattgcaatccctgccgagttactacgtcag
catttcccaggaaaagtctgctctgaactgaaatcctggcgtcctgttacttgggcagac
tatgaagcatcatcatccactcaattgctacgtgaaattcaagtagtaacaccacaacat
ttgctgttcatggctttatttgatcgtaaacatgttcgcttggaagctctggtggcagtt
tctccagaccatcccatcaaagttccagttgttgccttgtctctctactgggaagatcac
ttccagactgctaacagcccacaactgaggctaatggaaaaagaggtgaatgtgcattgg
gatgagctagtatcatcacgcagtgaccgtcttcacctcctccctttgatcttataccgc
ttggcagtttgtttagatgtttacactgaagcatatagtgctcatgctgatgctcgagga
ccagatgctcaattccataaagaaaaaatatttttcagacctgctagaggcccagacaga
gccttccctttcaagtatcatccaaaactaggggtgttctcacagcggtag
DBGET
integrated database retrieval system
