Homarus americanus (American lobster): 121877228
Help
Entry
121877228 CDS
T07477
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
hame
Homarus americanus (American lobster)
Pathway
hame04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
hame00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121877228
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
hame00536
]
121877228
Glycosaminoglycan binding proteins [BR:
hame00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121877228
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
New_glue
Motif
Other DBs
NCBI-GeneID:
121877228
NCBI-ProteinID:
XP_042238780
LinkDB
All DBs
Position
Unknown
AA seq
1583 aa
AA seq
DB search
MWRLPIPPRRPIPLPFPFLLLLLLSSVALPWAAAEPDPKPKPQDDYYDEYEEYEDYGYDY
NEEIATEEGSTECEFEDYGGVYGEVYPDEVYNYEDGYENYDPEGTSPDSFATEAPPYDPY
AVPGATYDSFATESPYETYDPYDYTEPPTTTTTTTTTSTTTTPPPTTTTPTTTTTTPRPP
APTVSYERESSRGRRPRRRKGERRGVVEREREEEPPPDLVGPTPPETGYGASTTGADGPS
GPPGDRGPIGTPGTPGTPGQPGPPGQMPDITPWLSQLSQSQGGEKGPQPDPFSYLQSQVG
PVGPRGTPGAPGPPGPQGFQGMRGEPGDAGPSGPSGPPGPRGMPGIPGKDGENGDDGAAG
PPGSVGPPGPRGLPGMPGLPGVKGHRGFPGLDGAKGEQGQLGDKGASGPGGPPGPIGPMG
SAGPRGERGREGPPGPPGLRGIDGIGGPPGPPGPPGKSGPPGFPGSAGAKGDQGVQGSKG
SQGLQGPRGEAGKPGSPGSSGSQGAPGKDGLPGEKGAPGSQGDSGPPGFPGARGPSGLPG
SPGMPGNKGERGLAGARGFKGELGMKGEGGTPGPRGLPGAPGSPGKRGKRGMRGPPGGVG
PQGERGPTGGRGLPGADGPPGPKGQSGDPGPSGTTGQKGREGNPGPPGLPGRQGLRGPTG
LSGPSGKTGRPGSRGPPGADGKPGDQGPQGIQGLPGPMGPPGPVGPLGESGKDGNPGETG
ATGPRGDPGKDGAQGPPGVSGPTGSPGERGPPGSPGARGFQGLPGASGISGANGKDGESG
LQGPRGLPGGAGLRGQRGFPGERGAQGPPGETGKRGEAGQLGSDGPSGPPGPAGQKGHSG
PSGLVGLPGGRGPHGLPGEKGERGSVGRVGPEGPPGRQGDQGPQGIMGPVGPPGEPAEKG
DPGPPGPPGEPGANGMTGERGSQGEQGLQGFPGPIGPPGNSGPKGQRGLPGQKGAQGNPG
LVGQPGESGPQGLAGLTGAKGQRGEAGQRGEIGLMGPPGRPGNSGTPGTPGDQGPPGASG
NPGIKGTPGDTGRPGLPGPTGQPGAPGPEGSKGDAGPEGRPGSVGQPGPVGPSGERGLPG
LPGPPGPPGLRGKPGARGETGAEGRRGDEGPVGPPGLAGAVGPIGPTGDTGAPGADGKPG
PPGISGRTGDKGPSGSPGPQGSPGPTGLPGPRGPSGPIGPTGERGERGEVGPQGVEGGPG
LRGKPGAPGSQGEKGETGASGPKGAKGHRGLIGLQGLPGPQGPNGDKGVPGVAGPPGPSG
EPGQKGPPGRDGGIGPQGIMGPPGPRGPSGEEGRHGPPGASGPSGPPGPPGESMGYDAAA
LAALLGQGQAKGPDPLQGDDSDLPARLFGKEITDDERRELITKAYEQLKTSFKKFLRPEG
TKDSPAKTCRDLAYTHPELPSGEYWVDPNEGDTKDAIVVHCDMEQKSTCVLPQPDMTQEF
NWQGESRGLIWLGDDIQPGFEFTYKADGNQMRFLQLLSSEASQQLTYHCKNSVAVFNARK
RNLRKAMQIMTSSDTQLKAIGNRKFKYRVIEDGCKRGHSTWASTKIEYRTDKPQRLPFVD
IGLRDVGRANQSFKIELGPVCYS
NT seq
4752 nt
NT seq
+upstream
nt +downstream
nt
atgtggcggctcccaatcccccccaggcggcccatcccgctacccttccccttcctgctt
ctgctcctgctctcctctgttgccttgccatgggcggcagcagaacccgaccccaaaccc
aaaccccaggacgattactacgatgagtatgaggaatatgaagactatggctacgactat
aatgaggaaattgccaccgaagagggaagcacggaatgtgagtttgaggattacggtggt
gtatacggcgaagtttatccggatgaagtttacaattacgaggatggttatgaaaactat
gatcctgaaggcacttcacctgactccttcgccactgaggctcctccctatgatccctat
gctgtccctggggcaacttacgactcctttgcaacagaatctccttatgaaacctacgac
ccctatgattacaccgaacctcctaccactaccactaccactaccacaacttccactaca
accacccctccccctactacaaccacccccaccaccaccaccaccactcctcgaccgccg
gctccaacagtttcttatgaaagggagtcatcaagagggcgaagacctaggcgtcggaag
ggtgaacgcagaggagttgttgaacgagaacgggaagaggaacctcccccggatcttgtt
ggaccaacccctcctgagaccggttacggcgcctccactaccggtgcagatggcccctct
ggacccccaggagaccgaggtcccattggtaccccaggtacacccggtaccccgggtcaa
cctggaccaccaggacagatgccagacatcacgccatggctgtcgcagctgtcacagtct
caaggcggagagaaaggacctcagcctgaccctttcagttaccttcaatcacaagttggt
cccgtcggccccaggggcaccccaggtgctccaggtccccccggcccccagggtttccag
gggatgcgaggtgaacctggggatgcaggtcctagcggtccctcaggccctccaggacca
cgtgggatgcccggaatccctggaaaagatggtgagaatggagacgacggcgcggcaggt
cccccaggttctgtaggcccccctggtccacgcggtcttcccggtatgcctggtctgcct
ggcgtaaaaggtcaccgtggcttccccggtctggacggagctaagggagaacagggacag
ctgggtgacaagggcgcctctggtccaggtggtccgcctggtcccatcggtcctatgggt
tcggctggtcctcggggtgaacgcggccgggagggtcctccaggtcctccaggtctaaga
ggtatcgacggcatcggtggtcctcctggtccccccgggcctcccggcaagtctggcccg
cctggcttccccggaagcgctggagctaaaggtgaccagggtgtacaaggatccaagggc
tcccaaggtcttcagggtcctcgaggtgaggccggaaagcccggttctcccggttcttct
ggttcccagggggctcctggaaaggatggtttgcccggagagaagggtgcacctggttcc
caaggagactcagggcccccagggttcccaggcgcccgagggccctcagggttacccggc
agccccggcatgccaggcaacaagggagaaaggggtctagctggagcgcgtggctttaag
ggagaactgggaatgaagggagaaggtggtacccctggccctcgagggctgccaggagcc
cccggatcccccggcaaacgcggcaagagaggtatgcgaggacccccaggtggagttggc
ccccagggtgaacgtggacccacgggaggccgtggtcttcctggtgctgatggaccccca
ggacctaaaggtcaaagtggcgaccctggcccctctggcaccaccggccagaagggtcgt
gaaggtaaccctggtcctcccggccttcccggccgccagggcctgcgaggacccaccggt
ctctctggtccttcaggcaaaactgggcgtcctggtagtcgtggtcctcctggtgcagat
ggcaaacctggcgaccaaggacctcagggcatccagggtcttcctggacctatgggacct
cccggaccagttggaccattaggagaatctggcaaggacggcaaccccggcgagaccggt
gccaccggcccccgaggtgacccagggaaggacggggctcaggggcctccaggtgtgtcg
ggacctacaggttctccgggtgaacgaggtcctccaggctccccaggagctcgaggtttc
cagggtctgcctggagcctctggcatttctggtgccaatggaaaggatggagagtctggt
ctgcagggccctcgaggtctgcctggtggtgctggtctccgcggtcagcgaggcttcccc
ggagaacgaggagctcaaggtcccccaggagaaacaggaaaacgtggagaagcgggtcaa
cttggctccgatggaccctctggtcctcccggtcccgcaggccaaaagggtcattctggc
ccctctggtcttgtcggtcttccaggtggtcgaggacctcacggtcttcctggagagaaa
ggtgaacgtggatctgtgggacgagttggccctgagggaccgccaggtcgccagggtgac
caaggccctcagggtattatgggcccagtgggacctccaggagaacctgcagaaaaggga
gacccaggtcctccaggacctcctggcgagcctggtgccaacggtatgacgggagagcga
ggctctcagggtgaacaaggtcttcagggcttccctggaccaattggaccccctggcaac
tcaggacctaaaggacagcgtggtcttcccggtcaaaagggagctcaaggtaatcctggt
ttagtaggacagcctggagaatccggacctcagggtcttgctggactgacgggtgcaaaa
ggacaacgaggtgaagctggacaacgtggagagattggtcttatgggtcctcccggacga
cccggcaactctggcacacctggaaccccaggtgaccaaggacctcctggcgcaagtggc
aaccctgggatcaagggaacccctggtgacaccggtcgccctggcctacccggaccaact
ggtcagcctggcgcccctggacctgaaggatccaagggtgatgctggccccgagggtcgc
cccggctctgtgggacaacctggccctgttggaccatcaggagagcgtggtctacctggc
ctccctggcccacctggtcctcctggtctccgaggaaaacctggcgctcgcggagaaact
ggtgcggaaggcagacgtggtgatgaaggtcccgttggtccccctgggttggctggtgct
gttggtcctattggtcctaccggtgacacaggtgcccctggtgctgacggtaagcctgga
ccccctggtatttctggtcgcactggagacaagggcccgtcaggttccccaggaccacag
ggcagtcccggacccactggattacccggcccccgtggtccttctggacccatcggacct
acaggagaacgcggagaacgtggagaggttggtccacagggcgtggagggcggcccaggt
ctccgaggcaagcctggtgcaccagggtcacaaggggagaagggagaaaccggcgcatca
ggtccaaagggtgccaagggacaccgtggtcttattggtcttcagggtcttcctggaccc
caaggtcccaatggtgacaaaggtgttcctggtgttgctggtccacctggtcctagtggt
gagcctggacagaagggtccacctggtcgtgatggaggcattggtcctcagggtattatg
ggtccacctggtcctcgcggtcctagtggtgaagagggccgccatggtcctcctggagca
tcaggtccttctggtccgcctggtccacctggtgagtctatgggctatgatgctgcagca
ctggcagcactgctgggacagggacaggctaagggcccagatcctctacagggcgacgat
tctgaccttccagcgcgtctctttggcaaggaaattactgacgatgaacgacgtgagctc
atcaccaaggcttacgaacaactcaagacatctttcaagaagttcctgagaccagaaggc
acaaaggattctccagccaagacttgtcgtgatctggcttatacacacccagagctgcca
agcggggagtactgggtggaccccaacgaaggcgacacgaaggacgctattgtagtacac
tgcgacatggagcagaagtcgacgtgcgtcctgcctcagcctgacatgactcaggagttc
aactggcagggagaatctcgtggcctcatctggctcggagatgacattcaaccaggattt
gagttcacgtataaggcggacggcaaccagatgcggttcttacagctgctatcatcggag
gcgtcgcagcagcttacttaccactgcaagaactccgtcgctgtgtttaatgccaggaag
aggaacctgcgtaaagccatgcagatcatgaccagctcagacacacaacttaaagccata
ggaaataggaagtttaaatacagagttatagaagacggctgtaagaggggacactccacc
tgggcgtccaccaagatcgagtaccgcacagacaagcctcagcgattacccttcgtcgac
atcgggctacgggatgtgggcagagcaaaccagtcctttaagatcgagctgggacctgtg
tgctactcgtag
DBGET
integrated database retrieval system
