Homarus americanus (American lobster): 121878445
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Entry
121878445 CDS
T07477
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
hame
Homarus americanus (American lobster)
Pathway
hame03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hame00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121878445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hame03041
]
121878445
Spliceosome [BR:
hame03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
121878445
Complex C
U5 SnRNP specific factors
121878445
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
121878445
NCBI-ProteinID:
XP_042240609
LinkDB
All DBs
Position
Unknown
AA seq
2374 aa
AA seq
DB search
MALPPYLIPGSPWAYMAQQQAQLAAAQAQAAHAQMHAHFQAQAQAHSQAQAIPRPQAGPP
PVENVSLEKMQEKARRWQQLHNKKYAEKRKFGFVDVQKEEMPPEHIRKIIRDHGDMSSRK
YRHDKRVYLGALKFMPHAVLKLLENMPMPWEQIRDVQVLYHITGAITFVNEIPWVIEPVY
ISQWSTMWMMMRREKRDRRHFKRMRFPPFDDEEPPLDFADNVLDVEPLEAIQMELDPEED
VEVADWFYEHKPLIDTKHVNGPTYRKWRLTLPQMATLYRLANQLLTDVSDNNYFYLFDLK
SFFTAKALNMALPGGPKFEPLIKDMNPADEDWNEFNDINKIIVRHQVRTEYRIAFPYLFN
NMPQYVHLSWYHTPVVLYIKTEDPDLPAFYFDPLINPISHRNTVKGEVLLPDDDEDFELP
EDVEALLKEWQLYDDATANGIALLWGPRPFNMRSGTMRRAIDVPLVKMWYREHCPPGQPV
KVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATKFFQTTTLDWVEVGLQVCRQGY
NMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDAH
VQYRLNNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMRQIRMCKDLKHVIYYRFNTGQV
GKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLSRQFEGRHSKGVAKTVTKQRVESHF
DLELRASVMHDILDMMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPTPIENMILR
YVKMKADWWTNTAHYNRERIRRGATVDKTVCKKNMGRLTRLYLKSEQERQHNYQKDGPYI
SPEEAVAIYTTTVHWLESRRFAPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQR
EELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSHLIPVYDVEPLEKITDAY
LDQYLWYEADKRRLFPPWVKPGDSEPPPLLVYKWCQGINNLTDVWDTADGECNVMLESKY
EKLYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVDINYKDMNHTNRYGIIRGLQFASFIV
QYYGLVMDLLVLGLKRAADMSGPPQMPNDFLNFQDVATETQHPIRLYSRYIDRIHIFFRF
TAEEAKDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRL
PRSVTTINWENSFVSVYSKDNPNLLFNMSGFECRILPKCRMTHEEFKHRDGVWNLQNEVT
KERTSQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYYRESVVNT
QELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLR
WSKQTDVGITHFRSGMSHDEDQLIPNLYRYIQPWETEFLDSQRVWAEYALKRQEATAQNR
RLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRIRTEFKQYQVLKQNPFWWTHQRHD
GKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNA
QRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHL
WQKIHESVVMDLCQVFDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAYKWNYSK
PSLLADSKDTMDGSTTQKYWIDVQLRWGDYDSHDVERYARAKFLDYTTDNMSLYPSPTGV
LIAIDLAYNLHSAYGNWFPGAKPLIQQAMAKIMKANPALYVLRERIRKGLQLYSSEPTEP
YLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKI
IHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPN
IVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLYDDWLKNISSYTAFSRLILILR
ALHVNNDRTKVLLKPDKTTITEPHHIWPSLSDEDWVKVEVQLKDLILADYGKKNNVNVAS
LTQSEIRDIILGMEISAPSAQRQQIAEIEKQTKEQSQLTATTTRTVNKHGDEIITSTTSN
YETATFSSKTEWRVRAISATNLHLRTNYIYVSSDDIKETGFTYILPKNVLKKFIIISDLR
TQIAGYLYGVSPQDNPQVKEIRCIVMPPQWGTHQMVHLPHKLPTHEFLNELEPLGWIHTQ
PNELPQLSPHDITTHATVMADNSSWTTDRTIVITCSFTPGSCSLQAYKLTPSGFEWGRNN
KDMGNNPKGYLPSHYEKVQMLLSDRFLGLFMTPLQASWNYNFMGVRHDPNMKYDLQLASP
KEFYHEVHRPAHFLNFSSLDEADTAGADRDNSLE
NT seq
7125 nt
NT seq
+upstream
nt +downstream
nt
atggccctgcctccgtaccttattccgggcagcccttgggcatacatggcccagcagcag
gcccagcttgctgctgcacaggcccaggctgcccatgctcagatgcatgcacacttccag
gctcaagcccaagcacattcccaggcacaggccattcctcgcccgcaggctggacctcca
cctgtagaaaatgtttccttggaaaagatgcaagagaaagctcggagatggcaacagctt
cacaataagaaatatgcagagaaaagaaaatttggttttgttgacgtgcaaaaagaagag
atgccaccagaacacatccgcaaaatcattcgtgatcatggagatatgtcaagtcgaaag
taccgtcatgacaagcgtgtatacttgggagccttgaagttcatgcctcatgctgtactg
aagcttcttgaaaacatgccaatgccatgggagcagatacgagatgtccaggttttatac
cacatcactggagccatcacatttgtcaacgagataccatgggtgattgaaccagtctac
atctcccagtggtctaccatgtggatgatgatgagaagagaaaagagagatcgacggcat
ttcaagaggatgagattccctccatttgatgatgaagagcctcctttggattttgctgac
aatgtgttagatgtggagccccttgaagctatccagatggaactagaccctgaggaagat
gtagaggttgcagactggttttatgagcacaagcctctcattgacactaaacatgtgaat
ggtcctacttatcgtaagtggcgcctgactcttcctcaaatggcaacgttgtaccgtctt
gctaaccagttgctgactgatgtctcggataacaattacttttacttgtttgatttaaag
tctttcttcacagcaaaggcattgaatatggctttacctggaggaccaaagtttgaacca
ttgattaaggacatgaaccctgctgatgaagactggaatgagttcaatgacattaacaag
atcatcgtacgtcatcaagtgcgaacagaatatcgcatagcattcccatatttgtttaat
aatatgccacagtatgtccatctcagctggtatcacacaccggttgtcctctacatcaaa
actgaggatcccgaccttcctgccttctactttgatcctcttattaatccaatctctcac
cgcaacacagttaaaggagaggttcttcttcctgatgatgatgaggactttgaacttcca
gaagatgtagaagctttgttgaaggaatggcaattatatgatgatgcaacagctaatggc
atagcactgttatgggggcctcggcccttcaacatgcgctctggtactatgagaagagca
attgatgtccctctagttaagatgtggtaccgtgaacattgtcctcctggtcaaccagtt
aaggtgcgtgtatcatatcagaagctgttgaagtattatgtcctcaatgctctcaagcac
cgtccacccaaagctcagaagaaacgttacttgttccgttccttcaaggcaaccaagttt
ttccagaccacgaccttggattgggtagaagttggcctccaggtctgtcgtcaaggatat
aacatgcttaacctccttattcatcgcaaaaaccttaattatttgcatctggattacaac
ttcaacttaaaacctgtcaaaacacttacaactaaagagagaaagaagtcaaggtttgga
aatgcattccacttgtgtcgtgaaattttaaggttgacaaagctggtggttgatgcacat
gtacagtacaggcttaacaatgtggatgccttccagttagcagatggacttcagtacatt
tttgctcatgttggtcaactgactggtatgtacaggtacaagtacaaactaatgagacag
atccggatgtgcaaagatctcaagcatgtcatatactacaggttcaacactggtcaggta
ggtaaaggtcctggttgtggtttttgggctccagggtggagagtatggctcttcttcatg
agaggaattaccccattgttggagcgttggctgggtaaccttctctctcgtcagtttgag
ggtcgacacagcaaaggtgtggctaagactgtgaccaagcagcgtgtggagtctcacttt
gatcttgagttacgagcctctgttatgcatgacattttggacatgatgccagagggtatc
aagcagaataaggctcgaacaattcttcagcatctttctgaggcttggcgatgttggaaa
gctaacatcccctggaaagtacccggtttgccaacaccaattgagaatatgattcttcga
tatgtcaagatgaaagctgattggtggaccaacactgctcattacaaccgtgagcgtatt
cgtcgtggtgccactgtggacaagactgtctgcaagaagaacatgggccgacttacacgt
ctgtacctgaaatctgaacaggaacggcaacacaactaccagaaggatggcccctacatc
agtcctgaggaagcagtggccatttacaccactactgtccattggttagagtctcgtcgt
tttgctcccatccctttcccacctctctcgtacaagcatgacacaaaactgctcatcttg
gccctggaaagactgaaagaagcttacagtgtgaaatcacgattaaatcagtcccagcga
gaggaattgggtcttattgaacaagcatatgacaacccccacgaagcgctgtctcgcatc
aaacgtcatttgctaactcagagagctttcaaggaagtgggcattgaattcatggacctt
tacagtcatttaatacctgtgtacgatgtagaaccccttgagaaaattacagatgcttac
ctggaccaatacctctggtatgaggccgacaagcgccgcctcttcccgccttgggtcaaa
cctggagactcggaacctccccctcttctggtgtacaagtggtgtcaaggcataaataac
ctcacagatgtttgggatacagctgatggagaatgtaatgtaatgctggagtcaaagtat
gaaaagttatatgagaagattgatcttacattacttaacaggttgctgcgattgattgtt
gaccataacattgctgattacatgacagctaagaataacgtagatatcaactacaaggat
atgaaccacacaaaccgttacggcatcatccgaggcttgcagtttgcctccttcattgta
cagtattatggtttagtaatggacttactggtcttgggtctgaaacgtgcagctgacatg
tcgggtcccccacaaatgcccaatgactttttaaactttcaagatgttgccacagagaca
cagcatcctatcagattgtactcacgatacattgacagaatacacatctttttccgtttt
acagctgaggaggcaaaagatcttatccagcgttacctgacagagcatcccgatccaaat
aatgaaaacattgtaggctacaacaacaagaagtgctggccaagggatgcaagaatgagg
ctcatgaagcatgatgtcaatttgggacgagcagtgttttgggatataaagaacagattg
cctagatctgtcaccactatcaactgggaaaattcctttgtctctgtgtattctaaagac
aaccctaatcttttattcaatatgtctggatttgaatgccgcattttgcccaagtgtcgc
atgactcatgaggagtttaagcatagagatggcgtgtggaacttacagaatgaagttaca
aaagaacgaacttcacagtgtttcttgcgtgttgatgatgaatctatgcaaaggttccac
aatcgtgttcgacaaattctcatggcttcaggttccacaacattcacaaagattgttaac
aagtggaacacagctttgattggtctcatgacatactacagagaatctgttgtgaacaca
caagaactattagatctgttggtcaaatgcgaaaataagattcaaacacgtattaagatt
ggtttgaactcaaagatgccttccagatttccccctgtagtattttatactccaaaggag
cttgggggccttggtatgttatcaatgggtcatgtacttattccacagtcggatttgcgt
tggagtaagcaaactgacgtgggcattacccatttcagatctggcatgagtcatgatgaa
gaccaacttattcctaacttgtatagatacattcagccctgggagactgagttccttgat
tcacaaagagtatgggctgagtatgcacttaagagacaagaggcaactgcacagaatcgt
cgtctcactctggaagacttagaagattcatgggatcgaggtattcctagaatcaacaca
cttttccagaaagatcgtcatacacttgcatatgacaaaggttggagaatacgaacagaa
tttaaacaataccaggtgctcaaacagaatcccttctggtggacacatcaacgccatgat
ggtaagctatggaatttgaacaattatcgtaccgacatgattcaagcattaggtggcgta
gaaggtattttagaacatacactctttaaaggtacatatttcccaacatgggaaggtctc
ttctgggagaaagcctctggttttgaagagagtatgaaatacaagaaattgacaaatgcc
caaagatctggtcttaatcagattcctaaccgtcgatttaccctttggtggtcaccaacc
attaacagagccaatgtgtatgtaggtttccaagtgcaacttgatctgactggtatattc
atgcatggaaaaattcccactctcaagatttctcttattcaaatcttccgtgcccatttg
tggcagaagatccatgagtcggtggtaatggatctgtgtcaggtctttgatcaggaactt
gatgctttggagattgagactgtacaaaaagagactatacatcctaggaaatcatacaag
atgaactcctcatgtgcagatattttactgtttgctgcctacaaatggaactactcaaag
ccttcactcttggcagattcaaaggacacaatggatgggtcaaccacacagaagtactgg
attgatgtacaactcagatggggcgactatgactctcatgatgttgaacgctatgcaaga
gcaaagttcttggactacacaactgacaacatgtcattgtacccatctcctacaggtgta
ttaattgcaattgatctagcatataatttacacagtgcatatggcaactggttcccagga
gccaaacctttgatacagcaagccatggctaagattatgaaggcaaacccagctctatat
gtattacgtgagcgcattcgtaagggtcttcagctctactcttctgaacccacagaaccg
tatctgtcttcacagaattatggtgaactattctccaaccagattatttggtttgtggat
gatacaaatgtgtacagagtaactattcacaaaacctttgagggtaacttaacaacaaag
ccaatcaatggtgcaattttcatctttaaccctcggacaggtcagctctttttgaagatc
attcacacatctgtgtgggcaggtcaaaagcgtctaggtcagttggccaaatggaaaaca
gctgaggaagttgctgcattgattaggtcactgcctgttgaagaacagccaaaacagatc
attgtaactcgaaaaggtatgttagatccgcttgaagtgcatttgctggatttccctaac
attgtgatcaagggttcagaactgcaactgcccttccaggcttgcctgaaggtggagaaa
tttggagatcttattctgaaagctacagagccacagatggttctcttcaatctttatgat
gattggctgaagaatatctcgtcttacacggctttctctcgtctaattcttatactgcgt
gcccttcatgtgaataatgatcgaaccaaggttctacttaaaccagataagaccaccata
acagaacctcatcatatctggccctcactttcagatgaagactgggtgaaagttgaagtt
caactcaaagatctcatccttgctgattatggtaaaaagaacaatgtaaatgtggcatct
ctcactcaatctgaaatcagagatattattctaggtatggaaattagtgcaccatcagcg
cagaggcaacagattgcagaaattgaaaagcagactaaggagcagtctcagcttacagct
acaactactagaactgtcaacaaacatggtgatgagattatcacctctaccaccagcaat
tatgaaacggcaacatttagcagcaagactgaatggagggtaagagcaatatctgccaca
aaccttcacctgcgtacaaactacatttatgtgtcatcggatgacataaaagaaactggt
tttacatacatcttgcccaagaatgtgttgaagaaatttatcattatctcagatcttcgt
actcagatagctggctacctgtacggtgttagtccccaagataacccacaagtaaaggaa
attcggtgtattgtcatgccaccacagtgggggacacatcagatggttcacctgccacac
aagctacctactcatgaatttttgaatgagctagagcctttaggatggattcatactcag
cccaatgagttaccacagctttctccccatgatattaccacacatgcaactgtcatggct
gacaatagctcatggaccacagatcgcaccatagttattacgtgttcatttacccctggc
tcttgctccttacaggcatacaaactaactccttctggttttgaatggggtcgtaacaat
aaagacatgggtaataatcctaagggttacttgccatctcactacgaaaaagttcaaatg
cttctctcagatcgattccttggtcttttcatgactccattgcaagcttcgtggaactat
aacttcatgggagtccgccatgatcccaacatgaaatatgatctgcaactggcaagtcca
aaggagttctatcatgaggttcaccgcccagcccacttcctcaacttttcatctctggat
gaggcagacacagcaggggctgacagagacaattccttagagtaa
DBGET
integrated database retrieval system
