Homarus americanus (American lobster): 121879770
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Entry
121879770 CDS
T07477
Name
(RefSeq) ATP-dependent RNA helicase me31b-like isoform X1
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
hame
Homarus americanus (American lobster)
Pathway
hame03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hame00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121879770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hame03019
]
121879770
03036 Chromosome and associated proteins [BR:
hame03036
]
121879770
Enzymes [BR:
hame01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121879770
Messenger RNA biogenesis [BR:
hame03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
121879770
mRNA degradation factors
5'-3' decay
Decapping complex
121879770
Chromosome and associated proteins [BR:
hame03036
]
Eukaryotic type
Gene silencing
piRNA pathway
121879770
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
DUF460
Motif
Other DBs
NCBI-GeneID:
121879770
NCBI-ProteinID:
XP_042242481
LinkDB
All DBs
Position
Unknown
AA seq
448 aa
AA seq
DB search
MMADMATIPNHTSPMKAIINNQVVKPGDDKSWKAQIVVPPRDRRKRTSDVTDTKGNEFED
FCLKRDLLMGIFEKGWERPSPIQEASIPVALSGRDILARAKNGTGKTGAYSIPLLEQIDP
SQNHIQAMVIVPTRELALQTSHICNELAKHIGVKVMVTTGGTNLKDDIMRIYETVHAVIA
TPGRILDLMEKKVAIMDKCKMLVLDEADKLLSQDFKGMLDRVISYLPLERQVLLYSATFP
LTVEQFMKKHLRSSRRSPYEINLMDELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQS
IIFCNSTQRVELLAKKITDLGYSCYYIHAKMAQAHRNRVFHDFRAGLCRNLVCSDLFTRG
IDIQAVNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYDDRFALHRIEQELGTEI
KPIPKVIDPALYVAEHHFEDDDEGNISK
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgatggcagatatggccactatccccaaccatacctcacccatgaaggccatcatcaac
aaccaggttgtcaaacctggtgatgacaagtcttggaaagcacagatcgtggtcccccct
agagacagaaggaaacgcacctccgacgtgacagacactaaaggcaacgagtttgaggac
ttttgtttgaagagagacctgttaatgggcatctttgagaagggttgggagagaccgtcg
cccatccaggaggcttccattcctgtagcacttagtgggcgagatattctggcacgagcc
aagaacggcactggcaaaactggggcctattccattccccttttagaacagattgacccc
agtcaaaaccacattcaggcgatggtgatcgtgccaacacgagagttggccctgcagact
agtcacatttgcaatgaattagcaaagcatattggagtgaaggttatggtcacgacagga
ggtaccaatttaaaggatgacataatgagaatctacgagactgtacacgctgtcatcgct
acacccggaaggatcttggatcttatggagaagaaagtagcaatcatggataagtgcaag
atgctcgtcctggatgaggcggataaattgttatcacaggattttaaaggcatgttggat
cgtgtgatctcctatctgcccctagagagacaagtccttctgtacagtgcaacttttccc
ctcacagttgagcagtttatgaagaagcacttaaggtcttcccgcagatcaccctatgaa
attaacctgatggatgaactgacgttgaagggagtcacgcaatactacgcatttgttcaa
gagcgacagaaagtccattgtctaaatacactattctccaagttacaaatcaaccaaagc
atcatcttctgcaactcaacccagcgcgttgaactgctagccaagaaaatcacggatctg
ggctattcctgctactacatccacgccaagatggcccaggctcaccgcaaccgtgtcttc
catgacttccgcgctggcctctgtaggaacctggtttgttctgatttgtttacgagagga
atagacattcaagcagtcaacgtggtaataaacttcgacttcccaaagatggcagagact
tacctccacaggattggtcggtcaggacgctttggccacttgggaattgccatcaactta
atcacgtatgacgatcgctttgcgcttcaccgtatcgaacaagaactgggaacggaaatt
aagcccatccccaaggtcattgatccagccctgtatgttgcggaacatcacttcgaagac
gacgacgagggaaacattagcaagtaa
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