KEGG   Hyperoodon ampullatus (northern bottlenose whale): 307050286
Entry
307050286         CDS       T11951                                 
Symbol
TDP1
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1 isoform 1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
hamp  Hyperoodon ampullatus (northern bottlenose whale)
Pathway
hamp03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:hamp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    307050286 (TDP1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hamp03400]
    307050286 (TDP1)
DNA repair and recombination proteins [BR:hamp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     307050286 (TDP1)
SSDB
Motif
Pfam: Tyr-DNA_phospho RMMBL
Other DBs
NCBI-GeneID: 307050286
NCBI-ProteinID: XP_079556352
LinkDB
Position
3:<166388717..166460428
AA seq 603 aa
MSQEGNYGRWTISSSDESEEEKPRPDEPSASFLPHAEQGVASEPKYTCSEARKAAHRRKI
APVKFSNTDSVSEASPPKRQKGGSQEGLGWCLSSSEDELPPETQQKQPKDTGVKEEKGLP
SPRDGAVPGAGHPSPSAGHGLETSGEGQDIWDLLGKGNPFQFYLTRVSGIKPKYNSGALH
IRDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRTKPILLVHGDKREAKAHLHAQAKP
YENIALCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPR
IVHGTHSSGESTTHFKADLISYLMAYNAAPLKEWIDTIQEHDLSETNVYLIGSTPGRFQG
NQKDNWGHFRLRKLLKEHASSIPKGESWPIIGQFSSVGSMGADESKWLCSEFKESLVTLG
KESRAPGSAVPLHLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHKWSADTS
GRSNAMPHIKTYMRPSPDFSQLAWFLVTSANLSKAAWGALEKNGAQLMIRSYELGVLFLP
SAFGLDSFRVKQKFFSGSQEPAASFPVPYDLPPELYGSKDRPWIWNIPYVKAPDTHGNMW
VPS
NT seq 1812 nt   +upstreamnt  +downstreamnt
atgtctcaggaaggcaattatgggaggtggacgatatccagtagtgatgaaagtgaggag
gaaaagccaagaccggacgagccatctgcctcttttctcccgcacgctgagcagggagta
gccagtgagccaaagtacacctgttccgaggctcggaaagctgcccacaggaggaagatt
gcacccgtgaaattcagcaacacagattccgtttcagaagcttcacctcccaaaaggcag
aagggcggttcccaggaaggcctgggctggtgtctctccagcagtgaggacgagctgccg
ccagagacgcagcagaagcagcctaaggacacgggggtcaaagaggagaaaggcctccct
tctcccagagatggtgctgtcccaggagctgggcatcccagcccctcggccggccacggg
cttgaaacgtcaggggaaggccaggacatctgggacctgctgggtaaagggaaccccttc
caattttacctcactagagtctccggaattaagccaaagtataactcgggagccctccac
atcagggatattttatctcctctatttgggacacttgtttcttcagctcagtttaactac
tgctttgatgtggactggctcgtaaaacagtatccaccagagttcaggacgaaaccaatc
ctgctcgtgcatggcgacaaacgcgaggcaaaggctcaccttcatgcccaggcaaagcct
tacgaaaacattgccctctgccaggcaaagttggatattgcatttggaacacaccacacg
aaaatgatgctactgctatacgaagaaggcctccgggttgtcatacacacctccaacctc
attcacgccgactggcaccagaaaacacaaggaatatggttgagccccttgtacccacga
atagtccatggaacccacagctctggagaatcaaccacacactttaaagctgacctcatc
agctacttgatggcttataacgccgctcccctcaaggagtggatagataccatccaggag
cacgacctctcagaaacaaatgtttaccttattggctcaaccccgggacgctttcaagga
aatcaaaaagataattggggacattttaggcttaggaagcttctgaaggagcatgcctca
tccatacctaaaggagagtcctggcctataataggtcagttctcaagcgttggctccatg
ggggccgatgaatcaaaatggttgtgttctgagtttaaagagagcttggtgacactgggc
aaagaaagcagggccccaggaagtgctgttcctcttcatctgatctatccttcagtggaa
aacgtgcggaccagcttagaaggatatccagctgggggctctcttccctatagcatccag
acggcggagaaacagaattggctccattcctattttcacaaatggtcagctgacacgtca
ggccgcagcaatgccatgccacatattaagacatatatgagaccctctccagacttcagt
caacttgcgtggttccttgtcacaagcgccaatctgtccaaggccgcctggggagcgtta
gagaagaacggcgcccagctgatgatccgctcctatgagctcggcgtccttttcctccca
tcagcatttggcctggacagtttcagagtgaaacagaaattcttctcaggaagccaggag
ccagcagcctcctttcccgtgccgtatgacctgcctccagaactgtatggaagtaaagat
cggccctggatttggaacattccttatgtcaaagcaccagatacacacgggaacatgtgg
gttccctcctga

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