Hyperoodon ampullatus (northern bottlenose whale): 307050314
Help
Entry
307050314 CDS
T11951
Symbol
VPS18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
hamp Hyperoodon ampullatus (northern bottlenose whale)
Pathway
hamp04140
Autophagy - animal
hamp04142
Lysosome biogenesis
hamp04145
Phagocytosis
hamp04148
Efferocytosis
hamp05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
hamp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
307050314 (VPS18)
04142 Lysosome biogenesis
307050314 (VPS18)
04140 Autophagy - animal
307050314 (VPS18)
04148 Efferocytosis
307050314 (VPS18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
307050314 (VPS18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hamp04131
]
307050314 (VPS18)
Membrane trafficking [BR:
hamp04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
307050314 (VPS18)
Hops complex
307050314 (VPS18)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_solenoid_2nd
VPS18_solenoid_1st
VPS18_RING_C
Clathrin
zf-RING_5
zf-C3HC4_2
zf-RING_16
zf-ANAPC11
zf-RING_Vps41
zf-RING_2
KNOX2
zf-RING_UBOX
zf_RING_Vps8
zf-rbx1
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
307050314
NCBI-ProteinID:
XP_079556394
LinkDB
All DBs
Position
3:complement(95885679..>95893348)
Genome browser
AA seq
973 aa
AA seq
DB search
MASILDEYEDSLSRSAVLQPGCPSVGIPHSGYVNAQLEKEVPIFTRQRIDFTPSERITSL
VVSCNQLCMSLGKDTLLRIDLGKANEPNHMELGRKDDAKVHKMFLDPTGSHLLIALSSTE
VLYVNRNGQKVRPLARWKGQLVESVGWNKALGTESSTGPILVGTAQGQIFEAELSASEGG
LFGPAPDLYFRPLYVLNEEGGPAPVCSLEAERGPEGRGFVIATTRQRLFQFIGRAAEGAE
AQGFSGLFAAYTDHPPPFREFPSSLGYSELAFYTPKLRSAPRAFAWMMGDGVLYGSLDCG
RPDSLLSEERVWEYPEGVGPGASPPLAIALTQFHFLLLLADRVEAVCTLTGQVVLRDHFL
EKFGPLKHMVKDSSTGHLWAHTERAVFRYQVQREARDVWRTYLDMNRFDLAKEYCRERPD
CLDTVLAREADFCFRQHRYLESARCYALTQSYFEEIALKFLEAHQEEALAEFLQRKLASL
KPAERTQATLLTAWLTELYLSRLGALQGDPEALNLYRETRECFRAFLSSPRHKEWLFASR
ASIHELLASHGDTEHMVYFAVIMQDYERVVAYHCQHEAYEEALAVLARHRDPQLFYKFSP
ILIRHIPRQLVDAWIELGSRLDARQLIPALVNYSQGGEAQQVSQAIRYMEFCVNVLGETE
QAIHNYLLSLYARGQPASLLAYLEQAGASPHRVHYDLKYALRLCAEHGHHHACVHVYKVL
ELYEEAVDLALQVDVDLAKQCADLPEEDEELRKKLWLKIARHVVQEEEDVQTAMACLASC
PLLKIEDVLPFFPDFVTIDHFKEAICSSLKAYNHHIQELQQEMEEATASAQRIRRDLQEL
RGRYGTVEPQDKCATCDFPLLNRPFYLFLCGHMFHADCLLQAVRPGLPAYKQARLEELQR
KLGAAPPPAKGSARAKEAEGGTATGGPSREQLKADLDELVAAECVYCGELMIRSIDRPFI
DPQRYEEEHLSWL
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctatcctggatgaatacgaggactccctctcccgctcggccgtcttgcagccc
ggctgccccagcgtcggcatcccccactcgggatatgtgaatgcccagctagagaaggaa
gtgcccattttcacgaggcagcgcattgactttaccccttctgagcgtatcaccagtctt
gtcgtctcctgcaatcagctctgcatgagcctgggcaaggatacactactccgcattgac
ttaggcaaagcaaatgaacccaaccacatggagctggggcgcaaggatgatgccaaagtt
cacaagatgttcctggaccctactggctctcacttgctgatcgctctgagcagcactgag
gtcctctacgtgaaccgtaatggacagaaagttcggcccctggcacgctggaaggggcag
ctggtggagagtgtgggctggaacaaggccctgggtaccgagagcagcacaggccccatc
ctggtcggcactgcccaaggccagatctttgaagcagagctctcggccagcgagggtggg
cttttcggccctgccccggatctctacttccgtccgttgtatgtgctaaacgaagaaggg
ggcccagcacctgtgtgctccctcgaggcagagcggggccctgaagggcgtggctttgtc
atcgccaccactcggcagcgcctcttccagttcataggccgagcagccgagggagctgag
gcccagggcttctcggggctctttgctgcctacactgaccacccacccccattccgtgag
ttccccagcagtctgggctacagtgagttggccttctacacccccaagttgcgctctgcg
ccccgggccttcgcctggatgatgggggatggtgtgttgtatggctcgttggactgcggg
cgtcccgactccctgctgagcgaggagcgggtctgggagtacccagagggggtgggtcct
ggggccagcccacccttggccatcgccctgacccagttccacttcctgctgctgctggcg
gaccgggtggaggcggtgtgcacgctgacggggcaggtggtgctgcgggaccacttcttg
gagaagtttgggccgctgaagcacatggtgaaggactcctccacgggccacctgtgggcc
cacaccgagcgggccgtcttccgctaccaggtacagcgggaggcccgggatgtctggcgc
acctacctggacatgaaccgctttgacctggccaaagagtattgtcgagagcggcctgac
tgcctggacacggtgctggcccgggaggccgacttctgcttccgccagcatcgttacctg
gagagtgcccgctgctacgccctgactcagagctactttgaggagattgccctcaagttc
ttggaggcccaccaggaagaggcgctggccgagttcctgcagcgaaaactggccagtttg
aagcctgccgagcgcacccaggccacgctgcttactgcctggctgacggagctctacctg
agccgactcggggccctgcagggtgaccctgaggccctgaacctctaccgggaaacccgg
gagtgtttccgcgccttcctaagcagcccccgccacaaggagtggctcttcgccagccgg
gcctccatccacgagctgctcgccagccacggggacacagagcacatggtatacttcgct
gtgatcatgcaggactacgagcgcgtggtggcgtaccactgccagcatgaggcctacgag
gaggccctggccgtgctggcccgccaccgcgacccccagctcttctacaagttctcaccc
atcctcatccgtcacatccctcgccagctggtggacgcctggattgagctgggcagccgg
ctggatgcccggcagctcatccctgccctggtgaactatagccagggtggcgaggcccag
caggtgagccaggccatccgctacatggagttctgcgtgaacgtgctgggtgagactgag
caggccattcacaattacctgctgtcgctctatgcccgaggccagccagcctcgctgctg
gcctacctcgagcaggccggggccagcccgcaccgggtgcattatgacctcaagtacgcg
ctgcggctctgtgctgagcatggccaccaccatgcttgcgtccacgtctacaaggtcctg
gagctgtatgaggaggctgtggacctggccctgcaggtggacgtggacctggccaagcag
tgtgctgacctgcccgaggaagatgaggagctgcgcaagaagctgtggctgaagattgct
cggcatgtggtgcaggaggaggaggatgtgcagacggccatggcctgcctggccagctgc
cccctgctcaagatcgaggacgtgctgcctttcttccctgacttcgtcaccatcgaccac
ttcaaggaggcgatctgcagctcgctgaaggcttacaaccaccacatccaagagctgcag
caggagatggaagaggccacagccagcgcccagcgcatccggcgagacctgcaggagctg
cggggccgctatggcaccgtggagccccaggacaaatgtgccacctgcgacttccccctg
ctcaaccgccctttttacctcttcctctgtggccacatgttccacgctgactgcctgctg
caggccgtgcggcctggcctgccggcctacaagcaggctcggctcgaggagctacagcga
aagctgggcgccgctccaccccctgccaagggctctgcccgggctaaggaggccgagggg
ggcactgccaccgggggtcccagccgggaacagctcaaggctgacctggatgaactggtg
gccgctgagtgcgtgtactgtggggagctgatgatccgctctattgaccggcccttcatc
gaccctcagcgctacgaggaggagcacctcagttggttgtag
DBGET
integrated database retrieval system
