Hyperoodon ampullatus (northern bottlenose whale): 307051992
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Entry
307051992 CDS
T11951
Symbol
SKIC3
Name
(RefSeq) superkiller complex protein 3
KO
K12600
superkiller protein 3
Organism
hamp Hyperoodon ampullatus (northern bottlenose whale)
Pathway
hamp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hamp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
307051992 (SKIC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hamp03019
]
307051992 (SKIC3)
Messenger RNA biogenesis [BR:
hamp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
307051992 (SKIC3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_19
TPR_16
TPR_8
TPR_14
TPR_17
TPR_CcmH_CycH
TPR_11
TPR_12
CFAP70_TPR_C
CFAP70_mid_TPR
ANAPC3
CABIN1_N
ARM_TT21_C
TTC22_N
TPR_INTS8_3
TPR_9
Sel1
Fis1_TPR_C
ARM_TT21_2nd
ARM_TT21_5th
TPR_15
TPR_30
TPR_6
TPR_20
TPR_5
Retrotran_gag_2
Arc_MA
BTAD
DUF7017
Motif
Other DBs
NCBI-GeneID:
307051992
NCBI-ProteinID:
XP_079558802
LinkDB
All DBs
Position
4:98862456..99026335
Genome browser
AA seq
1574 aa
AA seq
DB search
MSSKEVKAALKSARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQ
GAYKKAAELEPDQLLAWQGLASLYEKCNHINAKDDLPGVYQKLLDLYESVDKQKWCDVCK
KLVDLYYQEKKHVEVARTWHKLIKTRQEGGADNQELLQLWKKLTQLLAESTEDQNNETQQ
LLLTAFENALDLSDKIPSEDHQVLYRHFIQCLSKCPHETARLKKACEGMINIYPTVQYPL
EVLCLHLIETGSLTDEGEQYCCRLVEMDSKSGPGLIGLGIKALQDKKYEDAVRNLTEGLK
ESPLCTAGWYRLAEAQVRMHKPKEAILSCNQALKNIDNLGVSGGNLHQKNLCLHLKAEAL
IKLSDYESSEEAIRTLDQVSDANNIPGLLVLKGLAYLNKGSLDEASKIMEDLLSSYPDLA
EAHALEALIHFTKKDYLQAEKCFQLALEKDAEVAEYHYQLGLTYWSMGEETRKDKTKALT
HFLKAAKLDTYMGKVFCYLGHYYRDVVGDRNRARGCYRKAFELDDTDAESGAAAVDLSVE
LEEMETALAILTTVTEKASAGAAKWAWLRRGLYYLKAGQHSQAVADLQAALRADPKDFNC
WESLGEAYLSRGGYTTALKSFTKASELNPESTYSVFKVAAIQQILGKYKEAVAQYQLIIK
KKEDYVPALKGLGECHLMMAKAALVDYLDGKAVDYIEKALEYFTRALQHRADVSCLWKLV
GDACTSLYAVSPSKVNVSVLGVLLGQKEGKQVLKKNELLHLGGRCYGRALKLMSTSNTWC
DLGINYYRQAQHLAETGSNSNDLQELLEKSLHCLKKAVRLDSNNHLYWNALGVVSCYTGI
RNYALAQHCFIKSIQSEQINAVAWTNLGVLYLANEKIEQAHEAFKMAQSLDPSYLICWIG
QALIAETVASYDTMDLFRHTTELSMHTEGAIGYAYWVCTTLQDKSNRDTELYQYNILQMN
AIPAAQVVLSKYTERIQNYAPAFTMLGYLNEHLQLKKEAADAYQRAILLLQTAEDRDAYN
VTIRNYGRLLCSIGEYDKAIQAFKSTPLEELEDIVGFGLALFMKGLYKESSKAYERALST
VESEQDKAHILTALAIAEYKQGKMDVAKTLLFKCSILKEPTTESLQALCALGLAMQDATL
SKAALNELLKHCKQKDNDYKRCLLTSAIYALQGRTVAVQRQASKAVHSNPADAALWSLLS
RVVAQYTQRNAKGGAVAGNVAHILDSNHGKKALLYTAVNQLAVGSSSADGEKNTALKAVQ
KAALLSPGDPAVWAGLMAACHADDKLALVKNTQPKRMDLHLALLSAVSASKKSNIDFFFL
NKDKEFFENYNQSLEKWSLSQAVTGLIDTRRIAEAEALCTKNLKSNPDQPAVILLLRQVQ
CKPLLESQKPLPDAVLEELQKTVMSNSTSVPAWQWLAHIYQSQGMMGAAEMCYRKSLQVA
SQQGSWSGKLSSLLRLALLALEVCMANISSDHWPSLVQEATTEALKLCFCPLAVLLQALL
QFKRKMGARETRRLLERVVYQPGYPQSIVSTARWYLLRHLHAKNDYELIDVLVNNAKTHG
DTRALELNEKLSSQ
NT seq
4725 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcaaggaagtaaaggctgctctaaaaagtgctagagatgcaatcagaaacaaa
gaatacaaagaagctttgaaacattgtaagacagtgttaaaacaagagaaaaataactat
aatgcctgggtttttattggtgttgctgcagccgagctagaacaacctgatcaggcccag
ggtgcctataagaaagctgctgagttagagccagaccaattactagcttggcaggggtta
gcaagcttgtatgagaaatgtaatcacataaatgctaaggatgacttacctggtgtttac
caaaagctcctggatctttatgaaagtgttgacaaacagaagtggtgtgatgtctgtaag
aaacttgtggatctgtattaccaagaaaagaaacacgtagaggtggcccgaacatggcac
aaattgataaagacacggcaggaaggaggtgcagacaaccaagaacttcttcagctatgg
aagaaattgactcagttgctggctgagagtactgaggatcagaataatgagacccaacaa
ttgctcttaactgcttttgagaatgcactggacttatcagataagattcctagtgaagat
caccaggtgctttatagacatttcattcaatgtttatccaaatgtcctcatgagactgcc
aggttgaagaaggcttgtgaaggaatgataaacatctatcctactgtacaatatccatta
gaagtgctttgtttgcatttaattgaaacaggaagccttactgatgagggagaacagtat
tgttgtagattagtggaaatggattcaaaaagtggtccaggtctcattggtttaggcatt
aaagcattacaagacaaaaagtacgaagatgctgttaggaacttaacagaagggttaaag
gaaagccctctctgcacagctggatggtatcgtctggcagaagcccaagtcagaatgcat
aaacctaaggaagctattctttcatgcaatcaagctctgaagaacatagataatcttggt
gtctctggtggcaatcttcatcagaagaatctttgtcttcatttgaaagcagaggctttg
attaaactctcagattatgaatcttcagaggaagcaattcgtactcttgatcaggtttct
gatgcaaataatatcccaggacttttggttctcaaaggcttggcctatctgaacaaaggc
tcattagatgaagcttcaaagattatggaagaccttctctcttcttaccctgacctagct
gaagctcatgccctggaggctttgattcattttaccaaaaaggactatctacaagcagaa
aaatgttttcagctagctcttgagaaagatgctgaagttgctgaatatcattaccaactt
gggttaacgtattggtctatgggcgaagaaacaagaaaagataaaacaaaggctcttacc
cattttctaaaggctgccaaactggatacatacatgggcaaagttttctgctatttaggt
cattattacagggatgtagtaggagatagaaacagagcccgtggatgttacaggaaagct
tttgaattagatgacactgatgctgaatctggagctgcagcagttgacttaagtgtagag
cttgaagagatggaaactgccttagctatcctaacaacagtcactgaaaaggcaagtgct
ggagcggcaaaatgggcctggcttaggcgaggactatactatttaaaagctggtcaacat
tctcaagcagtggctgatttacaggcagcattgagggcagacccaaaggacttcaattgt
tgggagtcattaggagaggcatatttaagcagaggtggctatacaacagccttgaaatcc
ttcacaaaagccagtgagctgaaccccgaatccacatacagtgtgtttaaggttgcagca
atacagcaaatcctaggcaaatataaagaggcggtagctcaataccagctgatcattaaa
aagaaagaagattatgtgcctgctttgaaaggtttgggtgaatgccatctcatgatggca
aaagcagctctagtcgattatcttgatgggaaagctgtagactacatagagaaagcactg
gaatattttactcgggctctgcagcatcgagctgatgtgtcttgcctttggaagctagtt
ggggatgcttgtaccagtctgtatgctgtctcaccatctaaagtgaatgttagtgtctta
ggagtcctcctaggtcagaaagaaggaaaacaagtattaaagaaaaatgagctcctccat
cttggaggaaggtgttatggtcgtgcattaaaactgatgtctacatctaacacgtggtgt
gatcttggaattaattattatcgccaagcacaacatctagcagaaacaggcagcaactcg
aatgatcttcaggagctgttggagaaatctttgcattgtctgaaaaaggctgtgagactt
gacagtaataaccacttatactggaatgctcttggtgtagtttcatgttacactggtatt
agaaattatgcccttgctcagcactgtttcatcaaatcaatccagtcagaacaaattaat
gctgttgcatggaccaacttgggagtgttataccttgcaaatgaaaagattgagcaagct
catgaagctttcaaaatggctcaatcccttgatccatcttatttaatctgctggattgga
caagctctaattgcagagacagttgcaagttatgacaccatggatctcttcaggcacact
acagaactcagtatgcacacggagggagcaataggttacgcgtattgggtctgtacaaca
ttgcaagataaaagcaacagagacacggagctgtaccagtacaacatcctccagatgaat
gcaattccagcagcacaagtggttttgagtaaatacacagaaagaattcagaattatgct
ccagctttcacaatgttgggttacttaaatgaacatctacaactgaagaaggaagcagca
gatgcataccaaagggcaattttgttgttacagactgcagaagacagagatgcttataat
gttacaataagaaattatggcagattgttatgttctattggtgaatatgataaagctatc
caggcttttaagtcaacaccccttgaggagttagaagacatcgtaggttttggattggct
ttatttatgaagggtctgtataaagagagcagcaaagcctatgagagagccttgtctact
gttgaatcagagcaagacaaagctcatatcttgacagctctggcaatagcggagtataaa
caaggaaaaatggacgtagccaagacattgttatttaaatgctctatcttaaaagaacca
accacggaaagccttcaagccctgtgtgctctaggattggcaatgcaggatgcaacactg
tcaaaagctgcacttaatgagttactgaagcactgcaaacagaaagacaatgattataag
aggtgccttcttacttcagcgatctatgcactgcaaggtcgcactgtggcagtgcagaga
caagcatctaaagctgttcacagtaacccagctgatgctgctctttggtctttgttgtcc
cgagtagttgctcagtatactcaacgaaatgcaaagggaggtgcagtagcaggaaatgtg
gctcatattctggactcaaatcatggaaagaaggcattactatacactgcagtaaatcag
ttggctgtgggaagcagttcagcagatggtgagaaaaatactgcactaaaggccgttcag
aaggcagctctcctttctccaggtgatcctgctgtctgggctgggctaatggcagcttgt
catgctgatgataaactggccctagtgaagaacactcagccaaagaggatggatttacac
ttggcactgttatctgctgtttctgcttcaaaaaaaagtaacattgacttttttttttta
aataaagacaaagaattctttgaaaattacaaccaatctcttgaaaagtggtctctctcc
caagctgtcactggtctaatagatacaagaagaatagctgaagctgaagccctctgcaca
aagaatttaaaaagtaaccctgatcagccagctgttatcttacttttgagacaagttcaa
tgtaaaccactcctagagtcacaaaaacctctccccgatgctgtacttgaagagctgcaa
aaaacagtcatgtccaactcgacctctgttccagcttggcagtggctggcacacatatat
cagtcccaaggaatgatgggtgctgcagagatgtgttataggaagagtctacaagtagca
tcccaacagggcagctggagtgggaaactctcaagcctgttgagactagcactgcttgca
ttagaagtctgcatggctaatatttccagtgatcactggccatccttggttcaagaagct
acaactgaggccttgaaactttgcttttgtccgctggctgtccttttacaagctttgtta
caattcaaacgcaaaatgggagcaagagagacacggcgacttttagagagagtggtgtat
cagcctgggtatccccaatctattgtttcaacagcacgttggtaccttctgagacactta
catgccaaaaatgactacgagctcattgatgtgctggtaaacaatgccaaaactcatgga
gatacaagagcactggaactgaatgagaaattgtcctcacaataa
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integrated database retrieval system
