KEGG   Hyperoodon ampullatus (northern bottlenose whale): 307054009
Entry
307054009         CDS       T11951                                 
Symbol
LOC307054009
Name
(RefSeq) small nuclear ribonucleoprotein Sm D1-like isoform 1
  KO
K11087  small nuclear ribonucleoprotein D1
Organism
hamp  Hyperoodon ampullatus (northern bottlenose whale)
Pathway
hamp03040  Spliceosome
hamp05322  Systemic lupus erythematosus
Brite
KEGG Orthology (KO) [BR:hamp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    307054009 (LOC307054009)
 09160 Human Diseases
  09163 Immune disease
   05322 Systemic lupus erythematosus
    307054009 (LOC307054009)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:hamp03041]
    307054009 (LOC307054009)
   03032 DNA replication proteins [BR:hamp03032]
    307054009 (LOC307054009)
Spliceosome [BR:hamp03041]
 Complex A
  U1 snRNP components
   Sm proteins
    307054009 (LOC307054009)
  U2 snRNP components
    307054009 (LOC307054009)
 Complex B
  U1 snRNP components
    307054009 (LOC307054009)
  U4/U6.U5 tri-snRNP components
    307054009 (LOC307054009)
 Complex C
  U2 snRNP components
    307054009 (LOC307054009)
DNA replication proteins [BR:hamp03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     307054009 (LOC307054009)
SSDB
Motif
Pfam: LSM EBNA2_Core YomU_Tube Beta-barrel_AAEA
Other DBs
NCBI-GeneID: 307054009
NCBI-ProteinID: XP_079561622
LinkDB
Position
5:<110868072..>110868431
AA seq 119 aa
MKLERFLMKLSKETVTTELKYGTQVHGTITGVDVSMNTHLKTVKMTLKNREPVQLETLSI
RGNNIQYFILSDRLPLDTLLMDVEPKVKSKKREAVSRRGRGRGRGRGCGRGRERGGPRR
NT seq 360 nt   +upstreamnt  +downstreamnt
atgaagctcgagagatttctgatgaaattgagtaaagaaactgtaaccactgaattaaag
tatggaacacaggtccatggaacaatcacaggtgtagatgtgagcatgaatacacatctt
aaaactgtgaaaatgactctgaagaacagagaacctgtacagctggaaacactgagtatt
cgaggaaataacattcaatattttattctgtcagacaggttacctctggatacacttctc
atggatgttgaaccaaaggtgaagtctaagaaaagggaagctgtttcaagaagaggccga
ggccgaggaagaggaagaggatgtggacgaggcagagaaagagggggtcctaggagataa

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