Hyperoodon ampullatus (northern bottlenose whale): 307054041
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Entry
307054041 CDS
T11951
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain
KO
K06823
collagen type XVIII alpha
Organism
hamp Hyperoodon ampullatus (northern bottlenose whale)
Pathway
hamp04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
hamp00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
307054041 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hamp04147
]
307054041 (COL18A1)
00535 Proteoglycans [BR:
hamp00535
]
307054041 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
hamp00536
]
307054041 (COL18A1)
Exosome [BR:
hamp04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
307054041 (COL18A1)
Proteoglycans [BR:
hamp00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
307054041 (COL18A1)
Glycosaminoglycan binding proteins [BR:
hamp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
307054041 (COL18A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Fz
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
307054041
NCBI-ProteinID:
XP_079561668
LinkDB
All DBs
Position
5:<145489383..145537706
Genome browser
AA seq
1763 aa
AA seq
DB search
MAPDPSGRCGHCGLLLLLACCLTPARADLMSWLWPASTAGSTVTLASKPPGSSPVPPTED
TSPVRPTEDTSPVRPTEDTTTHEAPQDDPTQQWKALASPEPPLERPEVGQGQATAVPSAA
STVSPDTKEENIAGVGAKILNVALGIRSFVQLWDDTTPTKSSTRAGTPGPENPTDPLTTP
GPSSGPQDDGTTLWLSTGAPSSPDTQRTEAGTLPAPTQPPPSPDRPRALLGEPAVPPPSS
GRASVSSSRAGAPPQGSQPPPGWPQQLDSEGLLPAAARPGQQHRRPDDRTRTPPPLALVT
GSPGAHAAPWALSSDPSKLSHAALLALSGDRGAWVPHVANPAGPGLADNSSLLGAAGRCL
PLLPSLALCGHLGIGHFWLPNHLQHASGEEVQAAVRAWGALLQTHCHRFLAWFFCLLLAP
PCGPGALPGPPPCRQFCEALEDACWSRLDGRGLPFPCASLPAREDGRCVFIGPPAESQVL
EVGLQPLLGEPLPRQVALVHDPDVGPAYEFGADVGGDGWAARSLLPSTFFQHFSLLVRVW
PASARAGVLFAVTDAAQAVVLVGVKLAAARGAWQQVQLLYTEPGAARTHTAASFTLPALD
GRWTRLALTVDGAHAALFVDCKEVQRLPLAHSPRSLQLEPDARLFVAQAGRADPDKFQGL
ISDLRLREDPQVSPLHCLDEDEEDDDDRASGDLGSGLAETWEESGAPLEPRLPEAPPVTS
PPLAGVGSQEGFRTEEIEEETTVSSLAAQTLPSLSTVATWDGSEWSPGGSLKERGLKGQK
GEPGAQGPPGPVGPQGPAGSAVQSPDAQPVPGPQGPPGPPGKDGAPGRDGEPGDPGEDGK
PGDTGPQGFPGTPGDVGPKGEKGDPGVGPRGPPGPQGPPGPPGPSFRHDRLTFIDMEGSG
FGGDLESLRGPRGFPGPPGPPGVPGLPGEPGRFGMNSSDVPGPAGLPGVPGRDGPPGLPG
TPGPPGPPGKDGQPGQAGQKGSLGEAGAPGPKGSKGDPGPIGTPGEHGLAGRPGPAGPPG
PPGPPGPPGPGLAAGFDDMEGSGGPFWSTARGANGPQGPPGLPGVKGDPGVMGPPGTKGE
AGADGAPGFPGLPGREGVSGLQGPKGEKGPQGEKGNPGKDGVGQPGLPGPPGPPGPVVYM
SEQDRALASVPGPEGRVGLAGLPGPAGPKGDLGSRGQQGLPGPKGEKGEPGMVFSPDGRA
LTSAQKGAKGEPGFRGPPGPYGRPGHKGEIGFPGRPGRPGMNGLKGEKGEPGDASVGFSA
RGPPGPPGPPGPPGSPGTPVYDSNAFVESGRPGAPGLPGHQGPSGPKGDKGEVGPPGPPG
QFPLDLLHLGAEMKGEKGDQGAAGQKGERGEPGGGGFFSSSVPGPPGPPGYPGIPGPKGE
SIQGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPGPPSFPGPYRQTVSVPGPPGPPGPP
GPPGSMGTSSGQVRVWATYQTLLDQVPEVPEGWLVYVADREELYVRVRNGFRKVLLEART
PLPRRTDNEVAALQPPVVQLHEGNPYPRREPPHPTARSWRADDILASAPRLTHAQPYPGA
PHPGAYAHLRPATPTASPAHPHHDFQPVLHLVALNSPQSGGLRGIRGADFQCFQQARAAG
LAGTFRAFLSSRLQDLYSIVRRADRATLPIVNLRDEVLSPSWEALFSGSEGQLKPGARIF
SFDGRDVLQHPAWPQKSLWHGSDPSGRRLTESYCETWRTEARAATGQASSLLAGRLLEQK
AAGCSNAFIVLCIENSFMTSSSK
NT seq
5292 nt
NT seq
+upstream
nt +downstream
nt
atggctccggaccccagcggccgctgcggccactgtggcctgcttctgctgcttgcctgc
tgcctcacgcccgcccgggctgacctgatgtcctggctgtggcccgcgagcactgccggg
tccacggtcacactggcctctaagcccccgggcagctcacctgtgccgcccacagaggac
acctcacctgtgcggcccacagaggacacctcacctgtgcggcccacagaggacaccacc
acgcacgaggccccccaggatgaccccacccagcagtggaaagcccttgccagccccgag
ccgcctctggagaggccagaggtgggccagggccaggccaccgctgtcccctcggcggcc
tccactgtgagcccagacacaaaggaggagaacattgccggcgtcggagccaagatcctc
aacgtggctctgggcatccggagcttcgtccagctgtgggacgacaccacccccaccaag
agctccaccagggcagggacgccaggccccgagaaccccacggaccccctcaccacccct
ggaccctccagcggcccccaggatgacgggaccaccctctggctgagcactggggccccg
agctctccggacacccagaggaccgaggccggcaccctgccagcgcccacccagccgccg
ccctccccggacaggccccgggccctgctcggggagcctgcggtaccaccgccatcctca
ggtagagcttctgtgtcctcctcgcgggctggggcccctccccagggaagccagccgccc
ccggggtggccccagcagctggacagcgagggactcttgcccgcggcagcccgtcccggc
cagcagcaccgacgccctgatgaccgcacgcgcacgcctcctccgcttgccctggtgacg
ggctccccgggagcgcacgctgccccctgggctctctcctctgacccctccaagctgtct
cacgccgcactcttggctctaagtggggacaggggtgcttgggttccccacgtggctaat
cctgcggggcctggtctcgctgacaactcctcactgctgggggctgccggccgctgcctg
cccctgctgccctccctggcgctctgcggccacctgggcatcgggcacttctggctgccc
aaccacctccagcacgcgagcggcgaggaggtgcaggccgcggtccgggcctggggggcg
ctgctccagacccactgtcaccgcttcctggcctggttcttctgcctgctgctggccccg
ccctgtggccccggtgccctgcccggcccgccgccctgccgccagttctgcgaggccctg
gaggacgcgtgctggagccgcctggacgggcgcgggctgccgttcccctgtgcctcgctc
ccggcccgcgaggacgggcgctgtgtgttcattgggccgcctgcagagagccaggtcctg
gaggtggggctccagccgctgctcggggagcccctgccgcggcaggtggccctggtgcac
gaccccgacgtggggcccgcctacgagttcggcgcggacgtgggtggtgacggctgggcg
gcccggagcctcctgcccagcacgttcttccaacacttctccctgctggtgcgcgtgtgg
ccggcctcggcgcgcgcgggcgtgctcttcgcggtcacggacgcggcgcaggcggtggtc
ttggtgggcgtgaagctggcggcggcgcgcggggcgtggcagcaggtgcagctgctctac
acagagcccggtgccgcccgcacacacacggccgccagcttcacgctgcccgcgctggac
ggtcgctggacgcgcctggccctcactgtggacggcgcgcatgctgcgctcttcgtggac
tgcaaggaggtccagcgcctgcccctggcgcactccccacgcagcctgcagctggagccc
gatgcccgcctcttcgtggcccaggccggccgagcagaccctgacaagttccagggcctc
atctcggatctgaggctgcgtgaggacccccaggtgagccccctgcattgcctggatgag
gacgaggaggacgatgacgatagggcatcaggagacttgggcagcgggcttgcggagacc
tgggaggagtcgggcgcacccctggaacccaggctacccgaggctcctccagtcacttct
ccacccttggccggagtgggcagccaggaaggtttcagaactgaggaaattgaggaggag
accacggtgtcttcattagcagctcagaccctccccagcttgagcacagtcgccacgtgg
gacgggagcgagtggagccctgggggcagcctgaaagagcgaggcctgaaggggcagaaa
ggagaaccaggcgcccagggcccccccggcccggtcggtccccagggtcctgcaggctcc
gccgtgcagagtcccgatgcacagcctgttcccgggccgcagggacccccggggcccccg
gggaaggacggcgcccccggaagggatggcgagcccggtgatcctggcgaagacgggaaa
cctggggacaccgggccgcagggcttcccaggaaccccgggagacgtgggccccaagggc
gagaagggggatcctggggtcgggccgaggggacccccaggaccccaagggcctccgggg
ccacccggaccctccttcagacatgacaggctgaccttcatcgacatggaggggtctggg
tttggtggcgacctggagagcctccgcggccctcgaggcttccccggcccccctgggccc
cctggcgtcccaggcctgcccggagagccaggccgcttcgggatgaacagctcggacgtc
cccggacccgcaggccttcccggagtgcctgggcgggatgggccccccgggcttcctggg
accccgggacccccaggtcctccaggaaaagatgggcagccaggacaggccggccagaaa
ggcagccttggcgaggcgggcgccccaggacccaagggaagcaagggagaccccggccct
attggcacgcctggggagcacggcctggcaggacgccccggaccagcaggaccaccaggg
cccccgggcccccccgggcccccaggcccaggactcgctgcggggtttgacgacatggaa
ggctccgggggccccttctggtcgacagcccgaggtgccaatgggccgcagggaccgcct
ggcctgcctggagtcaagggggatcctggagtcatggggccaccagggaccaagggagag
gctggagcagacggagctcctgggttccccggccttcctggcagggagggtgtatccgga
ctccagggaccaaaaggagaaaaagggccccagggagagaaaggcaacccagggaaggac
ggagtggggcagccaggcctcccgggaccccccggacccccagggcctgtcgtctacatg
tcggagcaggacagagcactggcgagcgtgccgggccccgagggccgggtggggctcgca
ggcctccccggaccagccgggccgaagggagacctgggctccagaggccagcagggcctc
ccgggacccaagggcgagaagggtgagccgggcatggtcttcagccctgatggcagagcg
ctgacctccgcccagaaaggagccaagggtgagcctggcttccgaggacccccgggtccc
tacgggcggcccgggcacaagggcgaaattggcttccctggacggccggggcgccccggg
atgaacggactgaaaggggagaagggggagccgggagatgccagcgtgggattcagcgcg
aggggtccgcccggtccacctgggcccccagggcccccgggctctcccgggactcctgtc
tatgacagcaacgcgtttgtggagtctggccgccctggagccccgggattgccagggcac
caggggccttctggaccgaagggtgacaaaggagaagtgggcccacccgggccaccaggg
cagttcccgttggacctcctccacttgggcgctgagatgaagggggagaagggcgaccaa
ggggccgcagggcagaaaggagaaaggggcgagcccgggggcggcgggttcttcagctcc
agcgtacctggcccccccggcccgccaggctaccctgggattccggggcccaagggagag
agcatccagggccagcctggccctcctggacctcagggaccccctggcatcggctacgag
ggacgccaggggcctcctgggccccccggacctccagggcccccgggacccccatccttt
cctggcccttacaggcagactgtcagtgttcctggccccccgggcccacctgggccccca
ggaccacccggatccatgggcacgtcctcagggcaggtgagggtctgggccacgtaccag
accctgctggaccaggtgcccgaagtgccggagggctggctcgtctatgtggccgacaga
gaggagctgtacgtccgggtccggaacgggttccggaaggttctgctggaggcccgcacg
ccccttccccgcaggacggacaacgaggtggccgctttgcagccccccgtggtgcagctg
cacgagggcaacccgtacccccgccgggagcccccgcaccccacagcgcggtcctggcgg
gccgacgacatcctggccagcgccccgcgcttgacacacgcccagccctaccccggggcc
ccgcaccccggcgcctacgcgcacctccggccggcaacccccacggcctcacccgcccac
cctcaccacgacttccagccagtgctccacctggtcgcgctcaacagcccgcagtcagga
ggcctgcgtggcatccgcggcgccgacttccagtgcttccagcaggcgcgcgccgcgggg
ctggcgggcaccttccgcgccttcctgtcctcgcggctgcaggacctctacagcatcgtg
cgccgtgcagaccgcgccaccctgcccatcgtcaacctcagagatgaggtgctgtctccc
agctgggaggccttgttctcgggctccgagggccagctgaagcccggtgcccgcatcttc
tctttcgacggcagagacgtcctacagcaccccgcctggccccagaagagcttgtggcac
ggctcggaccccagcgggcgccggctgacggagagctactgcgagacgtggcggacagag
gccagggcggccaccggccaggcctcctcactgctggcgggccggctgctggagcagaaa
gcggcgggctgctccaacgccttcatcgtcctctgcatcgagaacagcttcatgacctcc
tcctccaagtag
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