Hyperoodon ampullatus (northern bottlenose whale): 307055730
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Entry
307055730 CDS
T11951
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
hamp Hyperoodon ampullatus (northern bottlenose whale)
Pathway
hamp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hamp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
307055730 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hamp03019
]
307055730 (PATL1)
Messenger RNA biogenesis [BR:
hamp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
307055730 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
307055730 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
307055730
NCBI-ProteinID:
XP_079564055
LinkDB
All DBs
Position
7:<13746015..>13781016
Genome browser
AA seq
771 aa
AA seq
DB search
MFRYESLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEEKL
PVAVNEQTGNGERDEMDLLGDHEENLAERLSKMVIENELEDPAIMRAVQTRPVLQPRPGS
LNSSIWDGSEVLRRIRGPLLAQEMPTVSVLEYALPQRPPQGPEDDRDVSERALPRRSTSP
IIGSPPVRAVPIGTPPKQTAVPSFNQQILCPKPVHVRPPMPPRYPAPYGERMSPNQLCSV
PNSSLLGHPFPPSVPPVLSPLQRAQLLGGAQLQPGRMSPSQFARVPGFVGSPLAAMNPKL
LQGRVGQMLPPAPGFRAFFSAPAPATPSPPQQHPPGPGPHLQNLRSQAPMFRPDTTHLHP
QHRRLLHQRQQQNRNQHRNLNGAGERGSHRSSHQDHLRKDPYANLMLQREKDWVSKIQMV
QLQSTDPYLDDFYYQNYFEKLEKLSAAEEVQGDGPKKERTKLITPQVAKLEHAYKPVQFE
GSLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDY
ERRYLLSLEEERPALMDERKHKICSMYDNLSGKLPGQERPSDDHFVQIMCIRKGKRMVAR
ILPFLSTEQAADILMTTARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPSVTVTSLLQQL
MNLPQSAAAPAPSNPHLTAVLQNKFGLSLLLVVLSRGEDLQGSDPTSESTQSNQWTEVMF
MATRELLRIPQAALAKPVSIPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgttccgctacgagtctttggaggattgtcctctggatgaagatgaagatgcatttcag
ggcctgggagaggaagatgaagagattgatcaattcaatgatgatacatttgggtcaggt
gcagttgatgatgattggcaggaagcacatgagcgcctggctgagttggaagagaagcta
cctgtggcggttaatgaacaaacaggcaacggagaaagggatgagatggacttgttaggt
gatcatgaggagaatctggcagaaaggctcagtaagatggtgattgaaaatgaactagaa
gatccagctatcatgagggcagtacagaccaggccagtgttgcaaccccgaccaggaagt
ctcaattccagcatctgggatggatctgaagttctgaggcgaatccgaggaccactgctt
gctcaggaaatgcctacagtgtctgtgttagaatatgccttgcctcagaggcccccacag
ggcccagaagatgatcgggacgtttctgagcgtgcattaccaaggcggtcaacttctcct
atcattgggagtcctcctgttagagctgtccccataggcaccccacctaagcagacggct
gtacccagcttcaaccaacagattctgtgtccgaagcctgtccatgttcgacccccgatg
ccaccacgctatcctgctccctacggtgagaggatgtctccaaaccagctctgcagtgtc
ccgaactcttccctactgggtcaccctttccctcctagtgttcctcctgttctcagcccc
ctccagagagcacagcttcttggaggagcacagctacagcctggacggatgtctcccagc
cagtttgcacgggtccctggatttgttggtagtccacttgctgccatgaatcccaagttg
ctgcaagggcgagttgggcagatgcttcccccagcaccaggcttccgtgccttctttagt
gctccagcccccgctacaccgtctcctcctcagcagcaccctcctggcccagggcctcac
ctgcaaaacctacgatcacaggccccaatgtttagaccagacacaacgcaccttcatcca
cagcaccgtcgactcttgcatcagagacagcaacagaatagaaatcagcatcggaatctc
aatggtgcaggagaaagaggaagtcaccggagcagtcatcaggatcatctccgaaaggat
ccatatgccaatctcatgttgcagcgagaaaaagattgggtctctaaaatccagatggtg
cagctgcaaagcactgatccctacctggatgatttttattaccagaattattttgaaaaa
ctggagaaactgtcagctgctgaagaagtgcaaggtgatggcccaaaaaaggagcgcacc
aagctcattacccctcaggtggccaaactggagcacgcctataagccagtgcagtttgag
ggctctttgggaaagcttactgtctctagtgtgaataatccccgaaaaatgattgatgct
gttgtgacatctcggagtgaggatgatgagacaaaagaaaaacaggttcgggacaaaaga
cgaaaaacccttgtcataattgagaagacctatagcttactccttgatgtggaggattat
gaaaggcgttacctcctaagtctggaagaagagcgacctgccctgatggatgaaagaaag
cacaaaatttgtagcatgtatgacaacttaagcgggaaattgcctggacaggagaggccc
agtgatgaccactttgtacagatcatgtgcatcagaaaagggaagagaatggttgcccgt
attcttcctttcctctccacagagcaagcggctgacattctcatgacaacagccaggaac
ctccctttccttatcaagaaggatgcacaagatgaggtgctgccatgcttattgagtccc
ttctctcttctcctctatcatcttccatcagtgactgtcaccagccttctgcaacagcta
atgaacctacctcagagtgcagctgcaccagcaccctccaatcctcacctcactgctgtg
ctccagaacaagttcggcctgtcactgctgctcgtcgtgctgagccggggggaagacctg
cagggctcagaccccacttcagaatcaacgcagagcaaccagtggacggaggtgatgttc
atggcaacccgagaacttctgcggattccccaggcagccctggccaagccagtctctata
cccacaaacctagtatccctgttttctcgttacgttgaccgacagaaactgaacttgctg
gagacgaaactgcagctagttcaggggatacgataa
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