Hyperoodon ampullatus (northern bottlenose whale): 307056901
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Entry
307056901 CDS
T11951
Symbol
LOC307056901
Name
(RefSeq) THO complex subunit 2-like
KO
K12879
THO complex subunit 2
Organism
hamp Hyperoodon ampullatus (northern bottlenose whale)
Pathway
hamp03013
Nucleocytoplasmic transport
hamp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hamp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
307056901 (LOC307056901)
09122 Translation
03013 Nucleocytoplasmic transport
307056901 (LOC307056901)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hamp03019
]
307056901 (LOC307056901)
03041 Spliceosome [BR:
hamp03041
]
307056901 (LOC307056901)
Messenger RNA biogenesis [BR:
hamp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
307056901 (LOC307056901)
Spliceosome [BR:
hamp03041
]
Complex C
Other components
EJC/TREX
307056901 (LOC307056901)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
307056901 (LOC307056901)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
307056901
NCBI-ProteinID:
XP_079566013
LinkDB
All DBs
Position
1:complement(<178105368..178110440)
Genome browser
AA seq
1613 aa
AA seq
DB search
MADAAVVLPAEWIKNWEKSGRGEFLHLCRILSENKSHESSTYRDFQQAVYELSYHVIKGN
LKHQQASNVLNDISEFCEDMPSLLADVFCILDTETNCLEEKSKRDCFTQLVLACLYFVSD
TVLKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYARLIAELG
QDLSGNITSDLISENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFISLLDSYMSMCE
PQTLCHILGFKFKFYQEPNGETPSSLYRVAAVLLQFNLIDLGELYVHLLPADNCIMDEHK
REIVAAKQIVRKLTMVVLSSDNIDQREKEKEKEEEKVEKPPDNQKLGLLEALLKIGDWQH
AQNIMDQMPPYYAASHKLIALAICKLIHITIEPLYRRVGVAKGAKGSPVDALPNKRAPKQ
AESFEDLRRDVFNMFCYLGPHLSHDPILFAKVVRIGKSFMKEFQSDGSKQEDKEKTEIIL
SCLLSITDQVLLPSLSLMDCNACMSEELWGMLKTFPYQHRYRLYGQWKNETYNSHPLLVK
VKAQTIDRAKYITKRLTKENVKPSGRQIGKLSHSNPTILFDYILSQIQKYDNLITPVVDS
LKYLTSLNYDVLAYCIIEALANPEKERMKHDDTTISSWLQSLASFCGAVFRKYPIDLAGL
LQYVANQLKAGKSCDLLILKEVVEKMAGIEITEEMTMEQLEAMTGGEQLKAEGGYFGQIR
NTKKSSQRLKAALLDHDLALPLYVLMAQQRNGVIFQKGGEKHLKLVGKLYDQCHDTLVQF
GGFLASNLSTEDYIKRVPSIDVLCNEFHTPHDAAFFLSRPMCAHHISSKYDELKKSEKGN
KQQRKVHKYITSCEMVMAPVHEAVVSLHVSKVWDDISPQFYATFWSLTMYDLAVPHTSYE
REVNKLKVQMKAVDDSQEMPPNKKKKEKERCTALQDKLLEEEKKQMEHVQRVLQRLKLEK
DNWLLAKSTKNETITKFLQLCIFPRCIFSAIDAVYCARFVELVHQQKTPKFSTLLCYDRV
FSGIIYTVASCTENEASRYGRFLCCMLETVTRWHSDRATYEKECGNYPGFLTILRATGFD
GGNKAHQLDYENFRHVVHKWHYKLTKASVHCLETGECTHIRNILIVLTKILPWYPKVLNL
GQALERRVHKICQEEKEKRPDLYALAMGYSGQLKSRKSYMIPENEFHHKDPPPRNAIASI
QNGPCSGLSSSSTGSASKSVESSNDETDKSRERSQWGVKAVNKASNATPKGNSSNGNSGS
NSKAVKENGKETGKEKEKEKKEKTSATTPEARVLGKDGKEKPKEQRPSKDEKARETKERT
PKSDKEKEKFKKEGKAKDEKFKTTVPNAESKSTQEKEREKEPSRERDIAKEMKLKENVKG
GEKAPVSGSLKSPVPRSDIAEVERELKRRKIDTYPSPSHCSTVLPKVPLGSESYASSPVI
SIHFLQDSLIELKESSAKLYINHTPPPLSKSKEREMDKKDLDKSRERSREREIKDEKDRK
ARKRDHSDNDREVPPDLLTKRRKEEHGTMGVSKHKSESPCESPCPNEKDKENNKSKPSGK
EKGGDSFKSEKMDKISSGGKKESRHDKGKIEKKEKWDSSGGKEEKKQSQDKHR
NT seq
4842 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcagctgtcgtgcttcccgcagagtggataaagaactgggagaaatcaggg
agaggtgaatttttgcatttatgccggatcctcagtgaaaataaaagccatgagagttca
acttatagagatttccagcaagctgtttatgagttatcataccatgtcattaaaggaaat
ctaaagcatcaacaggcatctaatgttcttaatgacattagtgaattttgtgaggatatg
ccctcccttcttgctgacgtattctgcatattagatactgagacaaattgtttggaagaa
aaaagcaagagagactgttttacacaactggtattagcatgtttgtatttcgtttcagac
acagttctaaaggaacgcttggatccagaaacactggaatcgttagggcttatcaaacaa
tcacagcaattcaatcaaaagtcagttaaaatcaagacaaaactcttttataagcagcaa
aaatttaatttgttaagagaagaaaatgaaggttatgccaggctgattgctgaattgggg
caagatttatctggaaatattactagtgatttgatctcagaaaatatcaaatctttaata
ggatgctttaatctggatcccaatagagttctggatgtcattttagaagtgtttgaatgc
aggccagaacacgatgacttctttatatctttattagactcttacatgagtatgtgtgaa
ccgcaaacactgtgtcatattcttgggttcaaattcaagttttaccaggaaccaaatgga
gagactccttcatctttgtacagagttgcagcagtacttctacaatttaatcttattgat
ttaggtgaactatatgtacatcttcttccagctgataattgcattatggatgaacacaaa
cgagaaattgtagcagctaagcagattgttagaaaacttacaatggttgtactgtcttcc
gataacattgaccaacgagagaaagaaaaggaaaaagaagaggagaaagtggagaagcca
cctgacaaccaaaaacttggtttgttggaagccttgttaaagattggtgattggcagcat
gcacagaacattatggatcagatgcctccatactatgcagcttcccataaactaatagcc
cttgctatttgcaagcttattcatataactattgagcctctctaccgaagagttggcgtt
gctaaaggtgctaaaggctcacctgttgatgctttgccaaataagagagcaccaaaacaa
gcagagagctttgaagatttgcggagagacgtcttcaatatgttctgttaccttggtcct
cacctttctcacgatcccattttattcgcaaaagtggtgcggataggcaagtcatttatg
aaggagtttcagtctgatggaagcaaacaagaagataaagagaagacggaaattatcctt
agctgcttgcttagcattactgaccaggtattacttccatctctttctttgatggactgc
aatgcttgtatgtctgaggaactgtggggaatgttgaaaacatttccataccagcataga
tatcgtctgtatggccagtggaagaatgaaacttacaacagtcatccacttttagtaaaa
gttaaagctcaaacaatagacagagccaaatatatcacgaagcgtctaaccaaggaaaat
gtgaagccctctggaagacaaattggcaagttgagccacagcaatccaaccattttgttt
gattatatcttgtcacaaatacagaagtatgataacttaataacacctgtagtagattca
ttgaaatacctcacgtcactgaattatgacgtcttggcctattgtatcattgaagcttta
gctaatccagaaaaggagaggatgaagcatgacgacacaaccatctcaagctggcttcag
agtctggctagtttctgtggtgcagtttttcgtaaatatccaattgatcttgctggtctt
cttcaatatgtggctaatcagctaaaggcaggcaaaagttgtgacctgcttatattgaaa
gaagtggtagaaaaaatggcaggaatagaaattacagaagaaatgacaatggagcaacta
gaggccatgactggtggagagcaactaaaagctgagggtggttactttggccagataaga
aacacgaaaaaatcctcccagagattaaaggctgcactattagaccatgatcttgctctt
cctctctatgtgcttatggctcagcagaggaatggggtaatctttcagaaaggtggagag
aaacatttgaaacttgtgggaaagctctatgatcagtgtcatgataccctggtacagttt
ggtggctttttagcatctaatctaagcacagaggattatataaagcgagtgccttcaatt
gatgtgctctgtaatgaatttcacacaccccatgatgcagcatttttcctgtctaggcca
atgtgtgcacaccatatttcatccaagtatgatgaacttaaaaaatcagagaagggaaat
aaacagcaacgtaaagttcacaagtacattacatcatgtgaaatggtgatggctcctgtg
catgaagcagtggtttccttacatgtttccaaagtctgggatgacatcagccctcaattc
tatgccacattctggtcactgacaatgtatgaccttgcagttccacataccagctatgaa
cgggaagtcaataaacttaaagtccagatgaaagcagttgatgacagtcaggaaatgcct
ccaaataaaaagaaaaaagagaaggagcgatgtactgcccttcaggacaagcttcttgaa
gaagaaaagaagcagatggaacatgtacagcgagtgctacagagactgaaactggaaaag
gacaattggcttttagcaaaatctaccaaaaatgagaccatcacaaaatttctacagctg
tgtatatttcctcgatgcattttttcagcaattgatgctgtttactgtgctcgttttgtt
gaattggtacatcaacagaaaactccaaagttttccacacttctttgctatgatcgagtt
ttctctggtataatttacacagtcgcaagctgtactgaaaatgaagctagtcgatatgga
agattcctttgctgcatgttagagactgtgaccaggtggcacagtgatagagccacatat
gaaaaggaatgtggaaattatccaggatttcttactatattacgggcaactggttttgat
ggtggaaataaagctcatcaattagactatgaaaattttcgacacgttgtacataaatgg
cattacaaactaaccaaggcatcggtacattgccttgaaacaggcgaatgtactcacatc
cggaatatcttgattgtgctaacaaaaatacttccttggtacccaaaagttttgaatctg
ggtcaggctttggaaagaagagtgcataaaatctgccaagaggagaaagagaagaggcca
gatctatatgcattggctatgggctactctgggcagttgaaaagtagaaagtcatacatg
atacctgaaaatgagtttcatcacaaagacccccctccgaggaatgcaattgccagtata
caaaatgggccttgtagtgggctttcttcatcgtcaacaggaagtgcatctaaatcggtt
gaaagcagtaacgatgagactgataaatcaagggagagatctcagtggggtgtgaaagca
gttaataaagcttctaatgccacaccaaaagggaattcaagcaatggaaatagtggctct
aacagcaaagctgttaaagaaaatggcaaagaaacagggaaagagaaagaaaaagagaaa
aaagaaaagacttcagctactactccagaggcccgagtacttggtaaagatggtaaagaa
aaaccgaaggaacaacggccgagtaaagatgaaaaagcaagagagacgaaggaaagaaca
cctaagtctgacaaagagaaagaaaaattcaagaaggaaggaaaagctaaagatgagaaa
ttcaagaccactgtccccaatgcagaatcaaagtcgactcaagaaaaggaaagggagaag
gagccatccagagaaagagatatagcaaaggaaatgaaattaaaggaaaacgttaaagga
ggagagaaagcaccagtttctgggtccttgaagtcacctgttccccgatcagatattgca
gaggttgaaagggaactaaaacgtcgcaaaattgatacctacccttctccatcacattgc
tcaacagtacttcccaaagttcctctgggttctgagagctatgccagctcacctgtcatc
tccattcattttctacaggacagtctcatcgaactcaaggaatcttcagcaaagctctac
attaatcatactcctccaccactgtccaagagtaaggagagagaaatggacaagaaagat
ttggacaagtcgagggaaagatccagagaaagagaaataaaagatgaaaaggacaggaaa
gcgcggaaaagggatcactcagacaatgaccgagaagtgccaccggacttattaaccaag
aggcggaaagaggaacatggaacaatgggggtttcaaaacacaaaagtgagagtccgtgt
gagtctccttgtccaaatgagaaagacaaggaaaacaataagtcaaaaccgtcaggcaaa
gaaaaaggcggtgactcatttaaatctgaaaaaatggataaaatctcctctggtggcaaa
aaggagtccaggcatgataaaggaaagatagaaaagaaagagaaatgggacagttcagga
ggaaaggaagagaagaaacagtcccaggacaagcacagataa
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