Hyperoodon ampullatus (northern bottlenose whale): 307057039
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Entry
307057039 CDS
T11951
Symbol
COL4A3
Name
(RefSeq) collagen alpha-3(IV) chain isoform 1
KO
K06237
collagen type IV alpha
Organism
hamp Hyperoodon ampullatus (northern bottlenose whale)
Pathway
hamp04151
PI3K-Akt signaling pathway
hamp04382
Cornified envelope formation
hamp04510
Focal adhesion
hamp04512
ECM-receptor interaction
hamp04518
Integrin signaling
hamp04820
Cytoskeleton in muscle cells
hamp04926
Relaxin signaling pathway
hamp04933
AGE-RAGE signaling pathway in diabetic complications
hamp04974
Protein digestion and absorption
hamp05146
Amoebiasis
hamp05165
Human papillomavirus infection
hamp05200
Pathways in cancer
hamp05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
hamp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
307057039 (COL4A3)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
307057039 (COL4A3)
04518 Integrin signaling
307057039 (COL4A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
307057039 (COL4A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
307057039 (COL4A3)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
307057039 (COL4A3)
09154 Digestive system
04974 Protein digestion and absorption
307057039 (COL4A3)
09158 Development and regeneration
04382 Cornified envelope formation
307057039 (COL4A3)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
307057039 (COL4A3)
09162 Cancer: specific types
05222 Small cell lung cancer
307057039 (COL4A3)
09172 Infectious disease: viral
05165 Human papillomavirus infection
307057039 (COL4A3)
09174 Infectious disease: parasitic
05146 Amoebiasis
307057039 (COL4A3)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
307057039 (COL4A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hamp04147
]
307057039 (COL4A3)
00536 Glycosaminoglycan binding proteins [BR:
hamp00536
]
307057039 (COL4A3)
Exosome [BR:
hamp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
307057039 (COL4A3)
Glycosaminoglycan binding proteins [BR:
hamp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
307057039 (COL4A3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
307057039
NCBI-ProteinID:
XP_079566165
LinkDB
All DBs
Position
8:complement(<11911801..>12050164)
Genome browser
AA seq
1670 aa
AA seq
DB search
MRLGTAPRPPALLLLLQLVLLVAAPTDGKGCVCKDKGQCFCDGTKGEKGEKGFPGPPGPP
GQKGYPGPEGLPGPQGPKGSPGLPGLTGPKGMRGTTGLPGFSGPPGLPGIPGHPGPYGPV
GLPGCNGSKGEQGFPGLRGTPGYPGIPGAVGLKGEKGAPAEGEGVALDGKGDPGLPGAPG
FQGLPGLPGFPGPIGPPGPPGFFGFPGTMGPPGPKGHMGDKVIGQKGERGMKGLTGPPGP
PGTVIVTLTGLVNRTDLKGEKGDQGAVGRSGRPGPSGPPGESYRSEKGAPGEPGPQGKPG
KDGAPGFPGTEGAKGSKGFPGLRGEDGIKGWKGDMGPPGFHGPVKYYDAYQEKGDEGIPG
PPGPKGAPGPQGPSGPPGAPGSPGSSRPGLQGAPGVPGVKGSKGERGPPGKSTAGLPGSP
GYPGSPGPTGLPGPPGPPGGIVFRRGPPGDGGLPGHTGSPGIPGVDGPKGEPGLLCTQCP
YVPGPPGPPGLPGLDGVKGFPGGQGAAGIKGIPGSPGSSGLPGFPGFPGAQGHPGLKGEK
GEAPQPERQVGAPGDPGLRGRPGRKGLDGIPGAPGVKGLPGPKGEPALSGEKGDQGLPGD
PGIPGSPGPAGPAGPSDYGPWGEPGPKGSQGLPGAPGLPGEAGPKGEIGVLTPVPGPPGP
PGAPGRAGPQGPPGIPGSTGKCDLGLPGPDGEPGIPGIGFPGPPGPKGDQGFPGTKGSPG
CPGEMGKPGLPGKPGLPGVKGEPGLAMPGEPGAPGLPGERGNSGENGEIGLPGLPGLPGV
PGTGGLDGPRGDPGQPGPPGERGPPGRCKESLRGTQGLPGLNGLKGQQGRRGETGPKGDP
GIPGLDRSGFPGEPGPPGMPGHRGEIGPPGTKGYPGNPGFLGPPGEKGMIGIMGVPGNVG
PPGPPGKPGTLGQRGTFGIPGVKGERGSPGAKGEQGDKGTPGPPGIFRLVGDKGEPGLKG
LAGKPGEKGNRGIPGLPGFKGLQGPPGPPGSPDSRGDPGSIGNPGEPGPRGVPGSMGNMG
VPGTKGMKGTMGFPGLAGRPGLPGTHGLPGDKGEPGYSEGTRPGPPGPKGDPGFPGDMGK
KGDRGPPGTPGHPGPAAPEGVPGNPGSPGHPGKPGPDGDLGSKGIKGFPGSPGIKGPPGP
PGFPGNPGPAGERGNQGRDGIPGPAGEKGETGLLGALPGPRGKPGPQGAKGDRGVPGLPG
LPGRKGPVGDAGPRGPMGMTGPQGPPGFPGSIIPGQKGDRGPPGRRGNPGEPGPPGSQGR
PVEGIKGDKGFMGQPGPRGPPGTVGDVGPPGHPGAPGAPGLPGVRGDPGFYGFPGIKGEK
GNSGFLGPSGPPGRIGPKGPPGVRGDPGTVKIISLPGSPGPPGPAGEPGMQGEPGPPGLP
GNSGPCGPRGKPGKDGLPGTPGPIGEKGNKGCKGEQGPPGSDGLPGLKGKPGDTGPPARG
IMMRGFVFTRHSQTTAIPSCPEGTEPLYSGFSLLFVQGNEQSHGQDLGTLGSCLQRFTTM
PFLFCNINDVCNFASRNDYSYWLSTPALMPVDMAPITGQALEPYISRCTVCEGPAIAIAV
HSQTTDTPSCPPGWISLWKGFSFIMFTSAGSEGAGQALASPGSCLEEFRASPFIECHGRG
TCNYYSNSYSFWLASLDPKRMFRKPIPSTVKAGELEKIISRCQVCMKRRH
NT seq
5013 nt
NT seq
+upstream
nt +downstream
nt
atgcgccttgggacggcgccgaggccgccggcgctgctgcttctgcttcagctggtgctc
ctggtggccgcgcccactgacggcaagggctgtgtctgtaaagacaaaggccagtgcttc
tgtgatgggaccaaaggggagaagggggagaaaggctttccaggaccccctgggcctccc
ggccagaaaggatacccaggtccggaaggcctgcctggaccacagggacccaagggctct
ccaggacttccaggactcactggtcccaaaggcatgaggggaacaactggattaccagga
ttttcaggtcctcctggacttccaggcatcccaggccatcctggaccgtatggacctgtc
ggtttgccaggatgcaatggttctaagggtgagcaagggtttccaggacttcgggggaca
ccaggctacccaggcatcccaggtgctgttggtttgaaaggagagaaaggggctcctgct
gaaggagaaggtgtagcccttgatggaaaaggtgaccctgggttgccaggagctccagga
ttccagggtttgccgggcctcccaggttttcctggacctattggtccacctggccctcca
ggattctttggctttccaggaaccatgggacctccaggacctaagggtcacatgggtgac
aaagtgataggacaaaaaggagagcggggtatgaaaggattaacaggaccgcccggacca
ccaggaacagttatcgtgacactaaccggcctggttaacagaacggacctcaagggggag
aagggagaccagggagccgtgggccggtctggacgccctggaccctcagggccacctgga
gaatcttacagatcagaaaaaggtgctcctggagaaccaggcccgcagggaaagcctgga
aaagatggtgcccccggtttccctggcactgagggagccaaaggcagcaagggtttccct
gggttaaggggtgaagatggcatcaaggggtggaaaggagacatgggccctccaggattt
catggtccagtaaaatattatgatgcataccaggaaaagggagatgaaggaattccaggc
ccaccagggcccaagggagctcctggcccacagggtcccagtggtccccccggagcccct
ggaagtcctgggtcatcaaggcctggcctccaaggagcccctggagtaccaggagtaaaa
ggaagtaaaggggagcgaggacccccaggaaagagcacagcggggcttcccgggtcccct
ggctatcctggttcaccaggccctacagggttgccaggacctccaggaccaccaggtggt
attgtttttcgcagaggtccacctggagacggtggacttccaggccatacagggtctcca
ggaatcccaggagtcgatgggcccaaaggggagccaggccttttgtgcacacagtgtcct
tatgtcccagggcctccaggccccccaggattgccggggttagatggcgtaaaaggattc
ccaggaggacagggggcagctggcattaaaggaatcccagggtccccaggaagctctggt
cttccaggatttccgggattcccgggtgctcagggtcatccaggacttaaaggagaaaaa
ggtgaagcacctcagccagagagacaagtgggtgccccaggggatccagggctccgagga
cgtcctggaagaaagggcttggatggaattcctggagctccgggagtaaaaggattacca
ggacctaagggagaaccggccctgagtggggagaagggggaccagggtcttccaggggat
cctggcatccctgggtccccaggacctgcaggaccggctggaccatcagactatggacct
tggggagagcctggtccaaagggctcccaaggacttcctggagcccctggactacctgga
gaagccggtcctaagggagaaatcggtgttttgacaccagttccagggcccccaggacct
cctggggccccaggccgtgctggcccccaaggtccacctggtatccctggatccacagga
aaatgtgatctgggtcttcctgggcctgatggtgaaccaggaattccaggaatcggattc
cctgggcctcctggacctaagggagaccaaggttttccaggaacaaaaggatcaccaggc
tgtcctggagaaatgggaaagccagggttacctggaaagccaggcctcccaggagtcaag
ggagaaccaggactagccatgcctggagaaccaggagcaccaggtttgccaggagaaaga
ggcaactctggggaaaatggagaaattggactccctggacttccaggtctccctggagtt
ccaggaactggagggcttgatggaccacgaggggatccagggcagcctggaccacctgga
gaaagaggccccccaggaaggtgcaaagaaagtctccgtggaactcaaggacttccaggc
ttaaatggattgaaagggcaacaaggcagaagaggcgaaacggggccaaagggagaccca
ggtattccaggcttggataggtcaggatttcctggagaacctggaccaccaggaatgccg
ggtcatcgaggggagataggaccacctggtacaaaaggatatccaggaaatccaggattt
ttagggccaccaggtgaaaaaggaatgattgggataatgggggtacctggaaacgttggc
cctccagggcctcctgggaagccaggcaccctgggacagagggggacctttggaattcca
ggagtaaaaggcgagagaggatccccaggtgccaaaggggaacaaggagataaaggaact
ccagggcctcctgggatattccgcttagtcggggacaaaggggaaccaggactcaaagga
cttgcagggaagcctggtgagaaaggaaacagaggcattccagggttaccaggtttcaaa
ggactccaagggccacctggaccaccaggatcaccagactccagaggagatccaggcagc
attgggaatcctggtgagccagggccacgtggtgtgccaggaagcatgggaaacatgggg
gtgccaggtactaaaggaatgaagggaactatgggattcccaggtctagctggaagacca
ggcctcccaggtactcatggtctcccaggagataagggagagccaggttattcagaaggt
acaaggccaggaccaccgggaccaaagggagatccaggatttccaggtgacatgggaaag
aaaggagatagagggccacctggcacacctggacatccaggccctgctgcaccagaagga
gttcctgggaatcctggaagccctggccacccaggaaagcccggtcctgatggtgatttg
gggtctaaaggaatcaaaggtttccctggctctccaggaataaaaggccctccaggccct
ccaggattcccaggaaatcctggaccagcgggtgagagaggtaatcaaggacgtgatgga
attcctggtccagctggagaaaaaggagaaacaggtttgctgggagcacttccaggccca
agagggaaacctggtcctcaaggagccaaaggagacaggggagtccccggcttgccgggc
ctccctggcaggaaagggccagtgggagatgctgggcctcgaggacccatgggcatgaca
ggacctcaagggccaccaggctttcctggttcaatcatccctggccaaaaaggagatcga
ggtccacctggcagaagaggaaacccaggtgagcctggtccccctggatctcaagggagg
cccgtagaaggcataaaaggagacaagggatttatgggccagcctggcccaagaggtccg
cctggaactgtgggagacgtgggaccaccaggtcatccgggagcaccaggtgccccaggt
ctgccaggggtcagaggtgatcctggattctatggatttccaggcataaaaggggagaag
ggtaattcaggatttctgggaccaagtggacctccagggcgaattgggccaaaaggacca
cctggtgtacgtggagaccctggcacagtgaaaatcatctcccttccaggaagcccaggc
ccacctggcccagctggagaaccagggatgcaaggagaacctgggcccccggggctaccg
ggaaactcaggaccctgtgggccaagaggtaaaccaggcaaggacggactaccaggaacc
cctggaccaattggagaaaaaggcaacaaaggttgtaaaggagagcaaggaccgcctgga
tccgatggcctgccaggattgaaggggaaacctggagacactggaccacctgcaaggggg
ataatgatgaggggctttgtcttcacccggcacagccagaccacggcgattccctcctgt
ccagaagggacagaaccactctatagtgggttttctcttctctttgtacaaggaaatgaa
caatcccatggacaggacctgggaactcttggcagctgcctgcaaagatttactacaatg
ccattcttattctgcaatatcaatgatgtatgtaatttcgcatctcgaaacgattattca
tactggctgtcaacaccagctctgatgcccgtggacatggctccaattactggccaggcc
ctggagccttatattagcagatgcactgtctgcgaaggtcctgcaattgccatagctgtt
cacagccaaactactgataccccctcatgtcctcctggctggatttctctctggaaagga
ttttctttcatcatgttcacaagtgcaggttcagagggcgctgggcaggcactggcatcc
cccggctcctgcttagaagaattccgagccagtccatttatagaatgtcatggaagagga
acttgcaactactattcaaattcctacagtttctggttggcttcattagaccccaaaaga
atgttcaggaaacctattccatcaactgtgaaagctggggagttagaaaagataataagt
cgctgtcaggtgtgcatgaagaggagacattga
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