Hyperoodon ampullatus (northern bottlenose whale): 307057570
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Entry
307057570 CDS
T11951
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform 1
KO
K12821
pre-mRNA-processing factor 40
Organism
hamp Hyperoodon ampullatus (northern bottlenose whale)
Pathway
hamp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hamp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
307057570 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hamp03041
]
307057570 (PRPF40A)
Spliceosome [BR:
hamp03041
]
Complex A
U1 snRNP components
U1 related factors
307057570 (PRPF40A)
Complex B
307057570 (PRPF40A)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
CEP164_N
WW_2
Motif
Other DBs
NCBI-GeneID:
307057570
NCBI-ProteinID:
XP_079566860
LinkDB
All DBs
Position
8:complement(69677370..>69732880)
Genome browser
AA seq
1039 aa
AA seq
DB search
MQATPSEAEAGGESPKSCVSAAQSDWTAGKPVSLLAPLIPPRSAGQPLTFSPSGRQPLRS
LLVGMCSGSGRRRSSLSPTMRPGTGAERGGLMVSEMESHPPSRGPGDGERRLSGSSLCSS
SWVSADGFLRRRPSMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQMP
GMMSSVMPGMMMSHMSQASMQPALPPGVNNMDVAAGATSGAKSMWTEHKSPDGRTYYYNT
ETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEGY
QNTIVAGSLITKSNLHAMIKAEESSKQEECTTSTAPVPTTEIPTTMSTMAAAEAAAAVVA
AAAAAAAAAAAANASASTSASSTVGGTVPVVPEPEVTSIVATVVDNENTVTISTEEQAQL
TSTPAVQDQSVEVSSNTGEETSKQETVADFTPKKEEEESQPAKKTYTWNTKEEAKQAFKE
LLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKE
AKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQ
AKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFE
EHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISS
DIRFTNMLGQPVFSLGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFED
FVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQAT
PPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKS
KKHHRKRSRSRSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESERSYKKSKKHKKKSKK
RRHKSDSPESDAEREKDKKEKDRESEKDRTRQRSESKHKSPKKKTGKDSGNWDTSGSELS
EGELEKRRRTLLEQLDDDQ
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcgacgccgagtgaggctgaggctgggggcgaatcgccgaagagctgcgtgtcg
gcggcgcagtctgattggacagcggggaagcctgtcagcttattggccccgctgatcccg
ccccgtagcgcagggcagcctttaacctttagccccagtgggcgccagccactcagatcg
cttcttgttggtatgtgtagcggcagtggccgccggcggagcagtctgagtccgacgatg
aggccggggacaggagccgagcgtggaggcctcatggtgagtgaaatggagagccatcct
ccctcgcggggtcccggggacggggagcggagattgtccggctcaagcctctgctccagc
tcttgggtctctgctgacggcttcctgaggagacggccctcgatggggcaccctggcatg
cattatgccccaatgggaatgcatcctatgggtcagagagcgaatatgcctcctgtacct
catggaatgatgccgcaaatgatgcccccaatgggaggaccaccaatgggacaaatgcct
ggaatgatgtcttcagtaatgcctggaatgatgatgtctcatatgtctcaggcttccatg
cagcctgccctaccgccaggagtaaataatatggatgtagcagcaggtgcaacatctggt
gcaaaatcaatgtggactgaacataaatcacctgatggaaggacctactactataatact
gaaacaaaacagtctacttgggagaaaccagatgatcttaaaactcctgctgagcaactt
ttatctaaatgcccttggaaggagtacaaatctgactctggaaagccttactattacaat
tctcaaacgaaagaatcccgctgggcgaaacctaaagaacttgaagatcttgaaggatac
cagaataccattgttgctggaagtcttattacaaaatcaaacctgcatgcaatgatcaaa
gctgaagaaagcagtaaacaagaagagtgcaccacatcaacagccccagttcctacaaca
gaaattccaaccacaatgagcaccatggctgctgcagaagcagcagctgctgttgttgca
gcagcagctgcagcagctgcagctgctgctgcagccaatgcaagtgcttccacctctgct
tctagtactgtcggtggaactgttccagttgttcctgagcctgaggttacttcgattgtt
gctactgttgtagataatgaaaatacagtaacaatttcgactgaagaacaagcacaactt
actagtacccctgctgttcaggatcaaagcgttgaagtgtctagtaatactggagaagaa
acatctaagcaggaaactgtagctgattttactcccaaaaaggaggaggaagaaagccaa
ccagcaaaaaaaacatatacttggaatacaaaggaggaagcaaagcaagcatttaaagaa
ttgttgaaggaaaagcgggtaccatctaatgcttcatgggagcaagctatgaaaatgatc
attaatgatccacgatacagtgctttagcaaagttgagtgaaaaaaagcaggcctttaat
gcttataaagtccagacagagaaagaagaaaaagaagaagcaagatccaaatacaaagag
gctaaggaatcctttcagcgttttcttgaaaatcatgaaaaaatgacttccacaactaga
tacaaaaaagcagagcaaatgtttggagagatggaagtctggaatgcaatatcagaacgt
gatcgtcttgaaatctatgaagatgttttattctttctttcaaaaaaagaaaaggagcaa
gcaaagcagttgcgaaagagaaattgggaagccttaaaaaacatacttgacaacatggct
aacgtgacatactctactacttggtctgaagcccagcagtatctgatggataatccaact
tttgcagaagatgaagaattacagaacatggataaagaagatgcgttaatttgctttgaa
gaacacattcgggctttagaaaaggaagaagaagaagaaaaacagaagagtttgcttcgg
gaaaggagacgacagcgtaaaaacagagaatcttttcagatatttttagatgaactgcac
gaacatggacaactgcattctatgtcatcttggatggaattgtatccaacaattagttcc
gacattagattcactaatatgcttggtcagccggttttttcattaggatcaactgcactt
gaccttttcaagttttatgttgaggatcttaaagcacgttatcatgatgagaagaagata
ataaaagacattctaaaggataaaggatttgtagttgaagtaaatactacttttgaagac
tttgtggcaataatcagttcgactaaaagatcaaccacattagatgcaggaaatattaag
ttggctttcaatagtttactagaaaaggcagaagcccgtgaacgcgaaagagaaaaagag
gaggctcggaagatgaaacgaaaagaatctgcatttaagagtatgttgaaacaagctact
cctccaatagaattggatgctgtctgggaagatatccgggagagatttgtaaaagagcca
gcatttgaggatataactctagagtctgaaagaaaacgaatatttaaagattttatgcat
gtgcttgagcatgaatgtcaacatcatcattcaaagaataagaaacactctaagaaatct
aaaaaacatcacaggaaacgctcccgctctcgatcaggatcagattcagatgatgatgac
agccattcaaagaaaaaaagacagcgatcagagtctcgttctgcttcagaacattcttct
agtgctgaatctgagagaagttacaagaaatcaaaaaaacataagaagaagagcaagaag
agaagacataaatctgactctccagagtcagatgctgaacgagagaaggataaaaaagaa
aaagaccgggaaagcgaaaaagacagaactagacaaagatcagagtcaaaacacaaatca
cctaagaaaaagactggaaaggattctggtaattgggatacttctggcagtgaactgagt
gaaggggaattggaaaagcgtagaaggacccttttggagcaactggatgatgatcaataa
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