Hyperoodon ampullatus (northern bottlenose whale): 307059969
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Entry
307059969 CDS
T11951
Symbol
LOC307059969
Name
(RefSeq) THO complex subunit 2-like
KO
K12879
THO complex subunit 2
Organism
hamp Hyperoodon ampullatus (northern bottlenose whale)
Pathway
hamp03013
Nucleocytoplasmic transport
hamp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hamp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
307059969 (LOC307059969)
09122 Translation
03013 Nucleocytoplasmic transport
307059969 (LOC307059969)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hamp03019
]
307059969 (LOC307059969)
03041 Spliceosome [BR:
hamp03041
]
307059969 (LOC307059969)
Messenger RNA biogenesis [BR:
hamp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
307059969 (LOC307059969)
Spliceosome [BR:
hamp03041
]
Complex C
Other components
EJC/TREX
307059969 (LOC307059969)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
307059969 (LOC307059969)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
RALGAPB_N
Motif
Other DBs
NCBI-GeneID:
307059969
NCBI-ProteinID:
XP_079570365
LinkDB
All DBs
Position
1:complement(161486890..161491830)
Genome browser
AA seq
1613 aa
AA seq
DB search
MADAAVVDLVEWIKNWEKSGRGEFLHLCRNLSESKSHDSSTYRDFQQALYELSSHVIKGN
LKHEQASNVLNDISEFCEDMPSILADVFCILDTETNCLEEKSKRDCFTQLVLACLYFVSD
TVLKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYARLIAELG
QDLSGNITSDLILENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFISLLESYMSMCE
PQTLCHILGFKFKFYQGPNEETPSSLYRVAAVLLQFNLMDLDDLYVHLLPADNCIMDEHK
REIVEAKQIVRKLTMVVLSPDKTDKREKEKEKEEEKVEKPPDNQKLGLLEALLKIGDWQH
AQNIMDQMPPYYAASHKLIALAICKLIHITIEPLYRRVGIPKGAKGSPVNALQNKRAPKQ
AESFEDLRRDVFNMFCYLGPHLSHDPILFAKVVRIGKSFMKEFQSDGSKQEDKEKTEVIL
SCLLSITDQVLLPSLSLMDCNACMSEELCGMFKTFPYQHRYRLYGQWKNETYNSHPLLVK
VKAQTIHRAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYILSQIQKYDNSITPVVDS
LKYLTSLNYDVLAYCIIEALANPEKERMKHDDTTISSWLQSLASFCGAVFHKYPIDLAGL
LQYVANQLKAGKSCDLLILKEVVQKMAGIEITEEMTMEQLEAMTGGEQLKAKGGYFDQIR
NTKKSSQRLKDALLDHDLALPLYVLMAQQRNGVIFQEGGEKHLKLVGKLYDQCHDALVQF
GGFLASNLSTEDYIKRVPSMDVLCNEFHTPHDAAFFLSRPMYAHHISSKYDELKKSEKGN
KQQHKVHKYITSCEMVMAPVHEAVVSLHVSKVWDDISPQFYATFWSLTMYDLAVPRTSYE
REVNKLKVQMKAIDDNQEMPPNQKKKEKERCTALQDKLLEEEKKQVDHVQQVLQRLKLEK
DNWLLANSTKNETITKFLQLCIFPRCIFSAIDAVYCARFVELVHQQKTPKFSTLLCYDRV
FSDIIYTVASCTENEASRYGRFLCCMLETVTRWHRDRATYEKECGNYPGFLTILRAAGFD
GGNKADQLDYENFRHVVHKWHYKLTKASVHCLETGEYPHIRNILIVLRKILPWYPKVLNL
GQALERRVHKICQEEKEKRPDLYALAMGYSGQLKSRKSYMIPENEFHHKDPPPRNAIASI
QNRPCSGLSSSSKGSASKSDESSNDETDKSRERSQCGVKAVNEASNATPKGNSSNGNSGS
NSKAVKENDKAKGKEKEKEKKKKTPATTPEARVLGKDGKEKPKEERPSKDGKARETKERT
PKSDKEKEKFKEQGKAKDEKFKTTVPNAESKSTQEKEREKEPSRERDIAKEMKSKENVKG
GEKTPVSGSLKSPVPRSDIAEVERELKRRKIDTYPSPSHCSPVLPKVPLGSENYASSPVI
SIHFLQDSLIELKESSAKLYINHTPPPLSKSKEREMDKKDLDKSRERSRERERKDEKDRK
ERKRDHSDNDREVPPDLLTKRRKEEHGTMGVSKHKSESPCESPYPNEKDKEKNKSKSSGK
EKGGDSFKSEKMDKISSGGKKESRHDKGKIEKKEKWDSSGGKEEKKQSSDKHR
NT seq
4842 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcagctgtcgtggatctcgtagagtggataaagaactgggagaaatctggg
agaggtgaatttttgcatttatgccggaacctcagtgaaagtaaaagccatgatagttca
acttatagagatttccagcaagctctttatgagttatcatcccatgtcattaaaggaaat
ctaaagcatgaacaggcatctaatgttcttaatgacattagtgaattttgtgaggatatg
ccctccattcttgctgacgtattctgcatattagatactgagacaaattgtttagaagaa
aaaagcaagagagactgttttacacaattggtattagcatgtttgtatttcgtttcagac
acagttctaaaggaacgcttggatccagaaacattggaatcattggggcttatcaaacaa
tcacagcaattcaatcaaaagtcagttaaaatcaagacaaaactcttttataagcagcaa
aaatttaatttgttaagagaagaaaatgaaggttatgccagactgattgctgaattgggg
caagatttatctggaaatattactagtgatttgatcttagaaaacatcaaatctttaata
ggatgctttaatctggatcccaatagagttctggatgtcattttagaagtgtttgaatgc
aggccagaacacgatgacttctttatatctttattagaatcttacatgagtatgtgtgaa
ccacaaacactgtgtcatattcttgggttcaaattcaagttttaccagggaccaaatgaa
gagactccttcatctttgtacagagttgcagcagtacttctacaatttaatcttatggat
ttagatgatctttatgtacatcttcttccagctgataattgcattatggatgaacacaaa
cgagaaattgtagaagctaagcagattgttagaaaacttacaatggttgtactgtctcct
gataaaactgacaaacgagagaaagaaaaggagaaagaagaggagaaagtggagaagcca
cctgacaaccaaaaacttggtttgttggaagccttgttaaagattggtgattggcagcat
gcacagaacattatggatcagatgcctccatactatgcagcttcacataaactaatagcc
cttgctatttgcaagcttattcatataactattgagcctctctaccgaagagttggcatt
cctaaaggtgctaaaggctcacctgttaatgctttgcaaaataagagagcaccaaaacaa
gcagagagctttgaagatttgaggagagacgtcttcaatatgttctgttaccttggtcct
cacctttctcacgatcccattttatttgcaaaagtggtgcggataggcaagtcatttatg
aaggagtttcagtctgatggaagcaaacaagaagataaagagaagacggaagttatcctt
agctgcttgcttagcattactgaccaggtattacttccatctctttctttgatggactgc
aatgcttgtatgtctgaggaactgtgtggaatgtttaaaacatttccataccagcataga
tatcgtctgtatggccagtggaagaatgaaacttacaacagtcatccacttttagtaaaa
gttaaagctcaaacaatacacagagccaaatatatcatgaagcgtctaaccaaggaaaat
gtgaagccctctggaagacaaattggaaagttgagccacagcaatccaaccattttgttt
gattatatcttgtcacaaatacagaagtatgataactcaataacacctgtagtagattca
ttgaaatacctcacttcattgaattatgatgtcttggcctattgtatcattgaagcttta
gctaatccagaaaaggagagaatgaaacatgacgacacaaccatctcaagctggcttcag
agtctggctagtttctgtggtgcagtttttcataaatatccaattgatcttgctggtctt
cttcaatatgtggctaatcagctaaaggcaggcaaaagttgtgacctgcttatattgaaa
gaagtggtacagaaaatggcaggcatagaaattacagaagaaatgacaatggagcaacta
gaggccatgactggtggagagcaactaaaagctaagggtggttactttgaccagataaga
aacactaaaaaatcctcccagagattaaaggatgcactattagaccatgatcttgctctt
cctctctatgtgcttatggctcagcagaggaatggggtaatctttcaggaaggtggagag
aaacatttgaaacttgtgggaaagctctatgatcagtgtcatgatgccctggtacagttt
ggtgggtttttagcatctaatctaagcacagaggattatataaagcgagtgccttcaatg
gatgtgctctgtaatgaatttcacacaccccatgatgcagcatttttcctgtctaggcca
atgtatgcacaccatatttcgtcaaagtatgatgaacttaaaaaatcagagaagggaaat
aaacagcaacataaagttcacaagtacattacatcatgtgaaatggtgatggctcctgtc
catgaagcagtggtttccttacatgtttccaaagtctgggatgacatcagccctcaattc
tatgccacattctggtcattgacaatgtatgaccttgcagttccacgtaccagctatgaa
cgggaagtcaataaacttaaagtccagatgaaagcaattgatgacaatcaggaaatgcct
ccaaatcaaaagaaaaaagagaaggagcgatgtactgcccttcaggacaagcttcttgaa
gaagaaaagaagcaggtggatcatgtacagcaagtgctacagagactgaaactggaaaag
gacaattggcttttagcaaactctaccaaaaatgagaccatcacaaaatttctacagctg
tgtatatttcctcgatgtattttttcagcaattgatgctgtttactgtgctcgttttgtt
gaattggtacatcaacagaaaactccaaagttttccacacttctttgctatgatcgagtt
ttctctgatataatttacacagtcgcaagctgtactgaaaatgaagctagtcgatatgga
agattcctttgctgcatgttagagactgtgaccaggtggcacagagatagagccacatat
gaaaaggaatgtggaaattatccaggatttcttactatattacgggcagctggttttgat
ggtggaaataaagctgatcaattagactatgaaaattttcgacacgttgtacataaatgg
cattacaaactaaccaaggcatcggtacattgccttgaaacaggcgaatatcctcacatc
aggaatatcttgattgtgctaagaaaaatacttccttggtacccaaaagttttgaatctg
ggtcaggctttggaaagaagagtgcataaaatctgccaagaggaaaaagagaagaggcca
gatctatatgcattggctatgggctactctgggcagttgaaaagtagaaagtcatacatg
atacctgaaaatgagtttcatcacaaagacccccctccgaggaatgcaattgccagtata
caaaatcggccttgtagtgggctttcttcatcatcaaaaggaagtgcatctaaatcggat
gaaagcagtaacgatgagactgataaatcaagggagagatctcagtgtggtgtgaaagca
gttaatgaagcttctaatgccacaccaaaagggaattcaagcaatggaaatagtggctct
aacagcaaagctgttaaagaaaatgacaaagcaaaagggaaagagaaagaaaaagagaaa
aaaaaaaagactccagctactactcctgaggcccgagtacttggtaaagatggtaaagaa
aaaccgaaggaagaacggccaagtaaagatggaaaagcaagagagacgaaggaaagaaca
cctaagtctgacaaagagaaagaaaaattcaaggagcaaggaaaagctaaagatgagaaa
ttcaagaccactgtccccaatgcagaatcaaagtcgactcaagaaaaggaaagagagaag
gagccatccagagaaagagatatagcaaaggaaatgaaatcaaaggaaaatgttaaagga
ggagagaaaacaccagtttctgggtccttgaagtcacctgttccccgatcagatattgca
gaggttgaaagggaactaaaacgtcgcaaaattgatacctacccttctccatcacattgc
tcaccagtacttcccaaagttcctctgggttctgagaactatgccagctcacctgtcatc
tccattcattttctacaggacagtctcatcgaactcaaggaatcttcagcaaagctctac
attaatcatactcctccaccactgtccaagagtaaggagagagaaatggacaagaaagat
ttggacaagtcgagggaaagatccagagaaagagaaagaaaagatgaaaaggacaggaaa
gagcggaaaagggatcactcagacaatgaccgagaagtgccaccggacttactaaccaag
aggcggaaagaggaacatggaacaatgggggtttcaaaacacaaaagtgagagtccgtgt
gagtctccttatccaaatgagaaagacaaggaaaaaaataagtcaaaatcgtcaggcaaa
gaaaaaggcggtgactcatttaaatctgaaaaaatggataaaatctcctctggtggcaaa
aaggagtccaggcatgataaaggaaagatagaaaagaaagagaaatgggacagttcagga
ggaaaggaagagaagaaacagtcctcggacaagcacagataa
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